Improved tools for biological sequence comparison.
نویسندگان
چکیده
منابع مشابه
Improved tools for biological sequence comparison.
We have developed three computer programs for comparisons of protein and DNA sequences. They can be used to search sequence data bases, evaluate similarity scores, and identify periodic structures based on local sequence similarity. The FASTA program is a more sensitive derivative of the FASTP program, which can be used to search protein or DNA sequence data bases and can compare a protein sequ...
متن کاملDedicated Hardware for Biological Sequence Comparison
Biological sequence comparison is a time consuming task on a Von Neuman computer. The addition of dedicated hardware for parallelizing the comparison algorithms results in a reduction of several orders of magnitude in the execution time. This paper presents and compares different dedicated approaches, based on the parallelization of the algorithms on linear arrays of processors.
متن کاملSAMBA: hardware accelerator for biological sequence comparison
MOTIVATION SAMBA (Systolic Accelerator for Molecular Biological Applications) is a 128 processor hardware accelerator for speeding up the sequence comparison process. The short-term objective is to provide a low-cost board to boost PC or workstation performance on this class of applications. This paper places SAMBA amongst other existing systems and highlights the original features. RESULTS R...
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We introduce a geometric framework suitable for studying the relationships among biological sequences. In contrast to previous works, our formulation allows asymmetric distances (quasi-metrics), originating from uneven weighting of strings, which may induce non-trivial partial orders on sets of biosequences. The distances considered are more general than traditional generalized string edit dist...
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ژورنال
عنوان ژورنال: Proceedings of the National Academy of Sciences
سال: 1988
ISSN: 0027-8424,1091-6490
DOI: 10.1073/pnas.85.8.2444