Identifying protein complexes and functional modules--from static PPI networks to dynamic PPI networks
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چکیده
منابع مشابه
Identifying protein complexes and functional modules - from static PPI networks to dynamic PPI networks
Cellular processes are typically carried out by protein complexes and functional modules. Identifying them plays an important role for our attempt to reveal principles of cellular organizations and functions. In this article, we review computational algorithms for identifying protein complexes and/or functional modules from protein-protein interaction (PPI) networks. We first describe issues an...
متن کاملIdentifying protein complexes and functionalmodulesçfrom static PPI networks to dynamic PPI networks
Cellular processes are typically carried out by protein complexes and functional modules. Identifying them plays an important role for our attempt to reveal principles of cellular organizations and functions. In this article, we review computational algorithms for identifying protein complexes and/or functional modules from protein^protein interaction (PPI) networks. We first describe issues an...
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Protein-Protein Interaction (PPI) networks contain valuable information for the isolation of groups of proteins that participate in the same biological function. Many proteins play different roles in the cell by taking part to several processes, but isolating the different processes in which a protein is involved is often a difficult task. In this paper we present a method based on a greedy loc...
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Introduction: In protein-protein interaction networks (PPINs), a complex is a group of proteins that allows a biological process to take place. The correct identification of complexes can help better understanding of the function of cells used for therapeutic purposes, such as drug discoveries. One of the common methods for identifying complexes in the PPINs is clustering, but this study aimed ...
متن کاملA Combination Method of Centrality Measures and Biological Properties to Improve Detection of Protein Complexes in Weighted PPI Networks
Introduction: In protein-protein interaction networks (PPINs), a complex is a group of proteins that allows a biological process to take place. The correct identification of complexes can help better understanding of the function of cells used for therapeutic purposes, such as drug discoveries. One of the common methods for identifying complexes in the PPINs is clustering, but this study aimed ...
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ژورنال
عنوان ژورنال: Briefings in Bioinformatics
سال: 2013
ISSN: 1467-5463,1477-4054
DOI: 10.1093/bib/bbt039