Identification of residue pairing in interacting β-strands from a predicted residue contact map
نویسندگان
چکیده
منابع مشابه
Contributions of residue pairing to beta-sheet formation: conservation and covariation of amino acid residue pairs on antiparallel beta-strands.
In an effort to better understand beta-sheet assembly, we have investigated the evolutionary behavior of neighboring residues on adjacent antiparallel beta-strands. Residue pairs were classified according to solvent exposure as well as by whether their backbone NH and C==O groups are hydrogen bonded. The conservation and covariation of 19,241 pairs in 219 sequence alignments was analyzed. Burie...
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Motivation Accurate recognition of protein fold types is a key step for template-based prediction of protein structures. The existing approaches to fold recognition mainly exploit the features derived from alignments of query protein against templates. These approaches have been shown to be successful for fold recognition at family level, but usually failed at superfamily/fold levels. To overco...
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Recently, a lot of progresses have been made in software implementations of pairings at the 128-bit security level in large characteristic. In this work, we obtain analogous progresses for hardware implementations. For this, we use the RNS representation of numbers which is especially well suited for pairing computation in a hardware context. A FPGA implementation is proposed, based on an adapt...
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ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2018
ISSN: 1471-2105
DOI: 10.1186/s12859-018-2150-1