منابع مشابه
Glassy dynamics of protein folding.
A coarse-grained model of a random polypeptide chain, with only discrete torsional degrees of freedom and Hookean springs connecting pairs of hydrophobic residues is shown to display stretched exponential relaxation under Metropolis dynamics at low temperatures with the exponent beta approximately 1/4, in agreement with the best experimental results. The time dependent correlation functions for...
متن کاملUltrametricity in Protein Folding Dynamics.
The free energy of the transition state (TS) between two nodes of an ergodic Markov state model (MSM) can be obtained from the minimum cut, which is the set of edges that has the smallest sum of the flow capacities among all the possible cuts separating the two nodes. Here, we first show that the free energy of the TS is an ultrametric distance. The ultrametric property offers a way to simplify...
متن کاملDynamics of one-state downhill protein folding.
The small helical protein BBL has been shown to fold and unfold in the absence of a free energy barrier according to a battery of quantitative criteria in equilibrium experiments, including probe-dependent equilibrium unfolding, complex coupling between denaturing agents, characteristic DSC thermogram, gradual melting of secondary structure, and heterogeneous atom-by-atom unfolding behaviors sp...
متن کاملDynamics of glassy systems
These lecture notes can be read in two ways. The first two Sections contain a review of the phenomenology of several physical systems with slow nonequilibrium dynamics. In the Conclusions we summarize the scenario for this temporal evolution derived from the solution to some solvable models (p spin and the like) that are intimately connected to the mode coupling approach (and similar ones) to s...
متن کاملGlassy protein dynamics and gigantic solvent reorganization energy of plastocyanin.
We report the results of molecular dynamics simulations of electron-transfer activation parameters of plastocyanin metalloprotein involved as an electron carrier in natural photosynthesis. We have discovered that slow, non-ergodic conformational fluctuations of the protein, coupled to hydrating water, result in a very broad distribution of donor-acceptor energy gaps far exceeding those observed...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Physical Review E
سال: 2000
ISSN: 1063-651X,1095-3787
DOI: 10.1103/physreve.61.r1040