Genome assembly and annotation of the white spot syndrome virus - infected pacific white shrimp (Ltopenaeus vannamei) in Vietnam
نویسندگان
چکیده
Pacific white shrimp (Penaeus vannamei or Litopenaeus vannamei) is native to South America, high economic value, and widely cultivated in the world Vietnam. Over last two decades, viral diseases have seriously threatened aquaculture industry. Among diseases, spot syndrome virus (WSSV) most important pathogens of farming. WSSV causes a cumulative mortality can reach 100% within 3–10 days. Genome sequencing assembly has been an step for deciphering molecular mechanisms accelerating genetic improvements traits interest economically species. This study aims at constructing annotating genome - infected The whole data was de novo assembled using SOAP denovo2 obtained draft WSSV- L. shrimp. contained 3,180,049 scaffolds (genome size ~1.67 Gb) with length arranging from 200 bp 137,569 N50 as 616 bp. Applying gene prediction method, we able identify 187,948 putative genes. results shown that 33,611 genes were annotate NT database 133,548 annotated UniProtKB/Swissprot database. These are only initial information about but they really future studies relating – resistance
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ژورنال
عنوان ژورنال: T?p chí công nghê sinh h?c
سال: 2021
ISSN: ['1811-4989']
DOI: https://doi.org/10.15625/1811-4989/13652