Erratum to: Understanding Brassicaceae evolution through ancestral genome reconstruction
نویسندگان
چکیده
منابع مشابه
Ancestral Genome Reconstruction on Whole Genome Level
Comparative genomics, evolutionary biology, and cancer researches require tools to elucidate the evolutionary trajectories and reconstruct the ancestral genomes. Various methods have been developed to infer the genome content and gene ordering of ancestral genomes by using such genomic structural variants. There are mainly two kinds of computational approaches in the ancestral genome reconstruc...
متن کاملAncestral Genome Reconstruction in Bacteria
The rapid accumulation of numerous sequenced genomes has provided a golden opportunity for ancestral state reconstruction studies, especially in the whole genome reconstruction area. However, most ancestral genome reconstruction methods developed so far only focus on gene or replicon sequences instead of whole genomes. They rely largely on either detailed modeling of evolutionary events or edit...
متن کاملEvolution of genome size in Brassicaceae.
BACKGROUND AND AIMS Brassicaceae, with nearly 340 genera and more than 3350 species, anchors the low range of angiosperm genome sizes. The relatively narrow range of DNA content (0.16 pg < 1C < 1.95 pg) was maintained in spite of extensive chromosomal change. The aim of this study was to erect a cytological and molecular phylogenetic framework for a selected subset of the Brassicacae, and use t...
متن کاملREGEN: Ancestral Genome Reconstruction for Bacteria
Ancestral genome reconstruction can be understood as a phylogenetic study with more details than a traditional phylogenetic tree reconstruction. We present a new computational system called REGEN for ancestral bacterial genome reconstruction at both the gene and replicon levels. REGEN reconstructs gene content, contiguous gene runs, and replicon structure for each ancestral genome. Along each b...
متن کاملReconstruction of the Brassica rapa ancestral genome.
The Brassicaceae family includes important crop plants as well as the model plant Arabidopsis thaliana. The evolutionary history of this family is characterized by a number of whole genome duplications (WGDs), and the relationships within the family have been a matter of study and debate for decades. Recent multi-gene phylogenetic analyses have revealed that the Brassicaceae family can be divid...
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ژورنال
عنوان ژورنال: Genome Biology
سال: 2016
ISSN: 1474-760X
DOI: 10.1186/s13059-016-0887-2