Enhanced reproducibility of SADI web service workflows with Galaxy and Docker
نویسندگان
چکیده
منابع مشابه
Enhanced reproducibility of SADI web service workflows with Galaxy and Docker
BACKGROUND Semantic Web technologies have been widely applied in the life sciences, for example by data providers such as OpenLifeData and through web services frameworks such as SADI. The recently reported OpenLifeData2SADI project offers access to the vast OpenLifeData data store through SADI services. FINDINGS This article describes how to merge data retrieved from OpenLifeData2SADI with o...
متن کاملMerging OpenLifeData with SADI services using Galaxy and Docker
Semantic Web technologies have been widely applied in Life Sciences, for example by data providers like OpenLifeData and Web Services frameworks like SADI. The recent OpenLifeData2SADI project offers access to the OpenLifeData data store through SADI services. This paper shows how to merge data from OpenLifeData with other extant SADI services in the Galaxy bioinformatics analysis platform, mak...
متن کاملEnhancing pre-defined workflows with ad hoc analytics using Galaxy, Docker and Jupyter
What does it take to convert a heap of sequencing data into a publishable result? First, common tools are employed to reduce primary data (sequencing reads) to a form suitable for further analyses (i.e., list of variable sites). The subsequent exploratory stage is much more ad hoc and requires development of custom scripts making it problematic for biomedical researchers. Here we describe a hyb...
متن کاملExecuting SADI services in Galaxy
BACKGROUND In recent years Galaxy has become a popular workflow management system in bioinformatics, due to its ease of installation, use and extension. The availability of Semantic Web-oriented tools in Galaxy, however, is limited. This is also the case for Semantic Web Services such as those provided by the SADI project, i.e. services that consume and produce RDF. Here we present SADI-Galaxy,...
متن کاملModeling Quality of Service for Workflows and Web Service Processes
Workflow management systems (WfMSs) have been used to support various types of business processes for more than a decade now. In workflows for e-commerce and Web-services applications, suppliers and customers define a binding agreement or contract between the two parties, specifying Quality of Service (QoS) items such as products or services to be delivered, deadlines, quality of products, and ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: GigaScience
سال: 2015
ISSN: 2047-217X
DOI: 10.1186/s13742-015-0092-3