DNA Knot Malleability in Single-Digit Nanopores
نویسندگان
چکیده
Knots in long DNA molecules are prevalent biological systems and serve as a model system for investigating static dynamic properties of biopolymers. We explore the dynamics knots double-stranded new regime nanometer-scale confinement, large forces, short time scales, using solid-state nanopores. show that undergo isomorphic translocation through nanopore, retaining their equilibrium morphology by swiftly compressing lateral direction to fit constriction. observe no evidence knot tightening or jamming, even single-digit explain observations malleability DNA, characterized sharp buckling nanopores, driven transient disruption base pairing. Our molecular simulations support model. These results relevant not only understanding packing manipulation living cells but also polymer physics development nanopore-based sequencing technologies.
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ژورنال
عنوان ژورنال: Nano Letters
سال: 2021
ISSN: ['1530-6992', '1530-6984']
DOI: https://doi.org/10.1021/acs.nanolett.0c05142