DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics
نویسندگان
چکیده
منابع مشابه
Paired-end RAD-seq for de novo assembly and marker design without available reference
MOTIVATION Next-generation sequencing technologies have facilitated the study of organisms on a genome-wide scale. A recent method called restriction site associated DNA sequencing (RAD-seq) allows to sample sequence information at reduced complexity across a target genome using the Illumina platform. Single-end RAD-seq has proven to provide a large number of informative genetic markers in refe...
متن کاملRAD-Seq Genotypes Less, But Offers More
Genotyping enables researchers to zero in on what makes an organism unique, with differences in DNA sequence accounting for everything from phenotypic traits, to the ability to combat disease or flourish in harsh environments. For the past decade, researchers have used microarrays to discover the single nucleotide polymorphisms (SNPs), copy number variations (CNVs), insertions, deletions, and d...
متن کاملRAD-Seq Genotypes Less, But Offers More
Genotyping enables researchers to zero in on what makes an organism unique, with differences in DNA sequence accounting for everything from phenotypic traits, to the ability to combat disease or flourish in harsh environments. For the past decade, researchers have used microarrays to discover the single nucleotide polymorphisms (SNPs), copy number variations (CNVs), insertions, deletions, and d...
متن کاملRADIS: analysis of RAD-seq data for interspecific phylogeny
UNLABELLED In an attempt to make the processing of RAD-seq data easier and allow rapid and automated exploration of parameters/data for phylogenetic inference, we introduce the perl pipeline RADIS Users of RADIS can let their raw Illumina data be processed up to phylogenetic tree inference, or stop (and restart) the process at some point. Different values for key parameters can be explored in a...
متن کاملRADtyping: An Integrated Package for Accurate De Novo Codominant and Dominant RAD Genotyping in Mapping Populations
Genetic linkage maps are indispensable tools in genetic, genomic and breeding studies. As one of genotyping-by-sequencing methods, RAD-Seq (restriction-site associated DNA sequencing) has gained particular popularity for construction of high-density linkage maps. Current RAD analytical tools are being predominantly used for typing codominant markers. However, no genotyping algorithm has been de...
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ژورنال
عنوان ژورنال: PeerJ
سال: 2020
ISSN: 2167-8359
DOI: 10.7717/peerj.9291