Database-driven Multi Locus Sequence Typing (MLST) of bacterial pathogens
نویسندگان
چکیده
منابع مشابه
فیلوژنی سویه‌های واکسن مایکوپلاسما آگالاکتیه موجود در ایران با استفاده از روش (Multi Locus Sequence typing (MLST
مایکوپلاسما آگالاکتیه یکی از عوامل اصلی ایجاد آگالاکسی در نشخوارکنندگان کوچک می‌باشد. ایران یکی از کانون‌های اصلی اپیدمی‌های سالانه این بیماری در جهان شناخته می‌شود. واکسن کشته آگالاکسی با استفاده از سه سویه بومی شیراز، طالقان و لرستان در موسسه رازی تولید می‌شود. به منظور شناسایی ویژگی‌های ژنتیکی این سویه‌ها سیستم تایپینگMulti Locus Sequence typing (MLST)i با تمرکز بر روی 5 ژن dnaA ،gltX ،gyrB ...
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متن کاملPopulation genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data.
The inference of population recombination (rho), population mutation (Theta), and adaptive selection is of great interest in microbial population genetics. These parameters can be efficiently estimated using explicit statistical frameworks (evolutionary models) that describe their effect on gene sequences. Within this framework, we estimated rho and Theta using a coalescent approach, and adapti...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2001
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/17.11.1077