Combining multiple functional annotation tools increases coverage of metabolic annotation
نویسندگان
چکیده
منابع مشابه
Designing Annotation Tools based on Properties of Annotation Problems
The creation of richly annotated, extendable and reusable corpora of multimodal interactions is an expensive and time-consuming task. Support from tools to create annotations is indispensable. This paper argues that annotation tools should be focused on specific classes of annotation problems to make the annotation process more efficient. The central part of the paper discusses how the properti...
متن کاملSimple Annotation Tools for Complex Annotation Tasks: an Evaluation
This paper presents a comparative evaluation of ready-to-use, XML-based tools for annotating linguistic data. We start by describing our research project that deals with the creation and annotation of empirical data related to information structure. Based on the requirements of this project and the data, we develop a set of evaluation criteria and apply them in the evaluation of five selected a...
متن کاملAnnotation Tools Based On The Annotation Graph API
Annotation graphs provide an efficient and expressive data model for linguistic annotations of time-series data. This paper reports progress on a complete open-source software infrastructure supporting the rapid development of tools for transcribing and annotating time-series data. This generalpurpose infrastructure uses annotation graphs as the underlying model, and allows developers to quickl...
متن کاملCreating Annotation Tools with the Annotation Graph Toolkit
The Annotation Graph Toolkit is a collection of software supporting the development of annotation tools based on the annotation graph model. The toolkit includes application programming interfaces for manipulating annotation graph data and for importing data from other formats. There are interfaces for the scripting languages Tcl and Python, a database interface, specialized graphical user inte...
متن کاملAnalyzing Tools for Biomedical Text Annotation with Multiple Ontologies
Textual databases such as PubMed, which contain references to scientific articles, are a major source for the extraction of useful information, since many scientific discoveries are deposited only in text form. However, due to the massive size of these bases, computational approaches are needed to extract information from texts. Currently, PubMed has more than 20 million citations from biomedic...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Genomics
سال: 2018
ISSN: 1471-2164
DOI: 10.1186/s12864-018-5221-9