Bootstrapping phylogenies inferred from rearrangement data
نویسندگان
چکیده
منابع مشابه
Prokaryotic Phylogenies Inferred from Whole-Genome Sequence and Annotation Data
Phylogenetic trees are used to represent the evolutionary relationship among various groups of species. In this paper, a novel method for inferring prokaryotic phylogenies using multiple genomic information is proposed. The method is called CGCPhy and based on the distance matrix of orthologous gene clusters between whole-genome pairs. CGCPhy comprises four main steps. First, orthologous genes ...
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A large deviation result is established for the bootstrap empirical distribution in a nite sample space, thereby validating both nonparametric and parametric bootstrapping in certain phylogenetic inference problems. The bias previously observed in the bootstrap distribution of the estimated tree topology is shown to stem from dispersion eeects in the joint distribution of sample and bootstrap e...
متن کاملBootstrapping phylogenies: Large deviations and dispersion effects
A large deviation result is established for the bootstrap empirical distribution in a finite sample space, thereby validating both nonparametric and parametric bootstrapping in certain phylogenetic inference problems. The bias previously observed in the bootstrap distribution of the estimated tree topology is shown to stem from dispersion effects in the joint distribution of sample and bootstra...
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ژورنال
عنوان ژورنال: Algorithms for Molecular Biology
سال: 2012
ISSN: 1748-7188
DOI: 10.1186/1748-7188-7-21