Bioinformatics Analysis of Cellulose Synthase <i>CesA</i> Gene from <i>Miscanthus lutarioriparius</i>
نویسندگان
چکیده
Based on 3 generations transcriptome sequencing technology-PacBio SMRT single-molecule real-time method, supplemented with 2 generation a complete and accurate unigene library was constructed. After comparing closely related species, the cellulose synthase gene ( CesA ) 4 , 7 9 gene sequences of Miscanthus lutarioriparius were spliced named as MlCesA4 MlCesA7 and MlCesA9 . Then, Bioinformatics analysis software used to construct phylogenetic trees of proteins, predict analyze the phosphorylation sites post-translational modifications amino acids, conserved domains proteins.The results showed that sequence lengths MlCesA 4, 7, genes were 2980 bp, 3310 3208 respectively, which to Sorghum bicolor and Zea mays ; cellulose synthase of (MlCesA) have 43 sites, MlCesA7 has 48 sites; is an unstable protein 6 transmembrane domains, are outside membrane inside membrane.; stable both 8 5 membrane. The three all hydrophilic secondary structure dominated by α-helix random coils.
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ژورنال
عنوان ژورنال: Molecular plant breeding
سال: 2021
ISSN: ['1923-8266']
DOI: https://doi.org/10.5376/mpb.2021.12.0001