Analysis of local structures near a PROSITE pattern
نویسندگان
چکیده
منابع مشابه
PPMuSA: PROSITE-Pattern Matcher Using Suffix Array
PPMuSA is a pattern matching program for PROSITE [2] signature patterns against amino acid sequence database. To characterize a group of protein among others, it is important work to find occurrences of a signature in an amino acid sequence of the protein. Such signatures are compiled in databases. The PROSITE is one of the databases of signatures that distinguish members of a protein families ...
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Existing methods for alignments are based on edition costs computed additionally position by position, according to a fixed substitution matrix: a substitution always has the same weight regardless of the position. Nevertheless the biologist favours a similarity according to his knowledge of the structure or the function of the sequences considered. In the particular case of proteins, we presen...
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ژورنال
عنوان ژورنال: Seibutsu Butsuri
سال: 2001
ISSN: 0582-4052,1347-4219
DOI: 10.2142/biophys.41.s40_2