AllEnricher: a comprehensive gene set function enrichment tool for both model and non-model species
نویسندگان
چکیده
منابع مشابه
Evaluating Gene Set Enrichment Analysis Via a Hybrid Data Model
Gene set enrichment analysis (GSA) methods have been widely adopted by biological labs to analyze data and generate hypotheses for validation. Most of the existing comparison studies focus on whether the existing GSA methods can produce accurate P-values; however, practitioners are often more concerned with the correct gene-set ranking generated by the methods. The ranking performance is closel...
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ConceptGen: a gene set enrichment and gene set relation mapping tool
MOTIVATION The elucidation of biological concepts enriched with differentially expressed genes has become an integral part of the analysis and interpretation of genomic data. Of additional importance is the ability to explore networks of relationships among previously defined biological concepts from diverse information sources, and to explore results visually from multiple perspectives. Accomp...
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Gene Ontology, KEGG pathway, Biocarta Pathway, Panther Pathway, and Pfam information were downloaded from their respective sources. For Pfam, Uniprot IDs were mapped to Entrez Gene IDs, thus resulting in all transcripts for a gene being mapped to the same Pfam terms. Chromosomal location was determined by NCBI cytoband assignment, and gene expression signatures were defined as detailed below. T...
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ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2020
ISSN: 1471-2105
DOI: 10.1186/s12859-020-3408-y