Methods Pattern analysis of a chorological dataset, consisting of the occurrences of 3041 vascular plant species in each of the 50 km 9 50 km UTM cells of a grid covering Iberia and the Balearic Islands, was based on cluster analysis (unweighted pair-group method using arithmetic averages; UPGMA) and parsimony analysis of endemicity (PAE). The Jaccard similarity index was used in the UPGMA, and...

the genetic diversity of 40 tobacco (nicotiana tabacum l.) cultivars was analyzed using 12 issr primers. thecultivars were evaluated for 14 traits using a simple lattice design (7×7) with two replications. of 149 amplified bands, 142 (95.3%) were polymorphic. maximum and minimum bands were generated by primers ubc825 (17 bands and 94.11% polymorphic) and ubc824 (7 bands and 100% polymorphic), r...

Once known some biological characteristics of six Trypanosoma cruzi strains, randomly amplified polymorphic DNA (RAPD) analysis was made. Cluster analysis by UPGMA (unweighted pair group method analysis) was then applied both to biological parameters and RAPD profiles. Inspection of the UPGMA phenograms indicates identical clusters, so supporting that usefulness of biological parameters to char...

Terminal restriction fragment length polymorphism (T-RFLP) is a culture-independent method of obtaining a genetic fingerprint of the composition of a microbial community. Comparisons of the utility of different methods of (i) including peaks, (ii) computing the difference (or distance) between profiles, and (iii) performing statistical analysis were made by using replicated profiles of eubacter...

Supplementary Figure 1. Alternative analysis of cluster centroid juxtaposition with MEGA2 software. A: UPGMA tree based on Euclidean distance between cluster centroids; B: Neighbor-joining tree based on inter-centroid distance matrix; C: UPGMA tree based on average Euclidean distance between cluster elements; D: Neighbor-joining tree based on average Euclidean distance between cluster elements....

Bioinformatics emerged as a challenging new area of research and brought forth numerous computational problems. Here computers are used to gather, store, analyze and merge biological data. In this paper, the problem of clustering interval-scaled data and sequence data is analyzed in a new approach using Hierarchical Sequence Clustering. In Sequence clustering, it is necessary to find the simila...

In this work we consider hierarchical clustering algorithms, such as UPGMA, which follow the closest-pair joining scheme. We survey optimal O(n)-time implementations of such algorithms which use a ‘locally closest’ joining scheme, and specify conditions under which this relaxed joining scheme is equivalent to the original one (i.e. ‘globally closest’).

the genetic diversity of 89 flue-cured tobacco varieties was examined using 12 issr primers. these cultivarswere evaluated at the guilan tobacco research center, rasht, iran, using a 7×7 simple lattice design with two replications, and 12 morphological traits. the total number of pcr amplified products was 143 bands ranging from 450 to 3000 bp, of which 108 bands (74.28%) were polymorphic. prim...

Methods Thirty-three sampling sites were located from 0 to 2400 m a.s.l. on Crete, and sampled using pitfall traps. Material from the high-activity period of Gnaphosidae (mid-spring to mid-autumn) was analysed. Sampling sites were divided into five altitudinal zones of 500 m each. Statistical analysis involved univariate statistics (anova) and multivariate statistics, such as multidimensional s...