نتایج جستجو برای: coi barcode region

تعداد نتایج: 544312  

Journal: :molecular biology research communications 2015
hamid reza esmaeili zeinab piravar mehrgan ebrahimi matthias f geiger

this study provides new data on chromosomal characteristics and dna barcoding of three endemic loaches of iran: spiny southern loach cobitis linea (heckel, 1847), persian stream loach oxynoemacheilus persa (heckel, 1848) and tongiorgi stream loach oxynoemacheilus tongiorgii (nalbant & bianco, 1998). the chromosomes of these fishes were investigated by examining metaphase chromosome spreads ...

Journal: :iranian journal of ichthyology 0
arash jouladeh-roudbar department fisheries, sari university of agriculture sciences and natural resources, mazandran, iran. soheil eagderi department of fisheries, faculty of natural resources, university of tehran, karaj, iran. saber vatandoust department of fisheries, babol branch, islamic azad university, babol, iran.

paraschistura alta , formerly reported from the eastern part of sistan basin in afghanistan, is reported for the first time from the zahak river in iranian part of this basin and its morphological characteristics, coi barcode and its phylogenetic relationship within other members of the genus paraschistura from iran are provided. all the measured meristic and morphometric characters of seven co...

2013
Juha Laiho Gunilla Ståhls

A majority of the known Colias species (Lepidoptera: Pieridae, Coliadinae) occur in the mountainous regions of Central-Asia, vast areas that are hard to access, rendering the knowledge of many species limited due to the lack of extensive sampling. Two gene regions, the mitochondrial COI 'barcode' region and the nuclear ribosomal protein RpS2 gene region were used for exploring the utility of th...

Journal: :PLoS Biology 2004
Paul D. N Hebert Mark Y Stoeckle Tyler S Zemlak Charles M Francis

Short DNA sequences from a standardized region of the genome provide a DNA barcode for identifying species. Compiling a public library of DNA barcodes linked to named specimens could provide a new master key for identifying species, one whose power will rise with increased taxon coverage and with faster, cheaper sequencing. Recent work suggests that sequence diversity in a 648-bp region of the ...

Journal: :Molecules and cells 2006
Hye Sook Yoo Jae-Yong Eah Jong Soo Kim Young-Jun Kim Mi-Sook Min Woon Kee Paek Hang Lee Chang-Bae Kim

DNA barcoding, an inventory of DNA sequences from a standardized genomic region, provides a bio-barcode for identifying and discovering species. Several recent studies suggest that the sequence diversity in a 648 bp region of the mitochondrial gene for cytochrome c oxi- dase I (COI) might serve as a DNA barcode for identify- ing animal species such as North American birds, in- sects and fishes....

2012
Rui Chen Li-Yun Jiang Ge-Xia Qiao

BACKGROUND The mitochondrial gene COI has been widely used by taxonomists as a standard DNA barcode sequence for the identification of many animal species. However, the COI region is of limited use for identifying certain species and is not efficiently amplified by PCR in all animal taxa. To evaluate the utility of COI as a DNA barcode and to identify other barcode genes, we chose the aphid sub...

2017
Farhat A Avin Bhassu Subha Yee-Shin Tan Thomas W A Braukmann Sabaratnam Vikineswary Paul D N Hebert

DNA barcoding involves the use of one or more short, standardized DNA fragments for the rapid identification of species. A 648-bp segment near the 5' terminus of the mitochondrial cytochrome c oxidase subunit I (COI) gene has been adopted as the universal DNA barcode for members of the animal kingdom, but its utility in mushrooms is complicated by the frequent occurrence of large introns. As a ...

2012
M. Alex Smith Claudia Bertrand Kate Crosby Eldon S. Eveleigh Jose Fernandez-Triana Brian L. Fisher Jason Gibbs Mehrdad Hajibabaei Winnie Hallwachs Katharine Hind Jan Hrcek Da-Wei Huang Milan Janda Daniel H. Janzen Yanwei Li Scott E. Miller Laurence Packer Donald Quicke Sujeevan Ratnasingham Josephine Rodriguez Rodolphe Rougerie Mark R. Shaw Cory Sheffield Julie K. Stahlhut Dirk Steinke James Whitfield Monty Wood Xin Zhou

Wolbachia is a genus of bacterial endosymbionts that impacts the breeding systems of their hosts. Wolbachia can confuse the patterns of mitochondrial variation, including DNA barcodes, because it influences the pathways through which mitochondria are inherited. We examined the extent to which these endosymbionts are detected in routine DNA barcoding, assessed their impact upon the insect sequen...

2011
Shadi Shokralla Xin Zhou Daniel H. Janzen Winnie Hallwachs Jean-François Landry Luke M. Jacobus Mehrdad Hajibabaei

DNA barcoding is an effective approach for species identification and for discovery of new and/or cryptic species. Sanger sequencing technology is the method of choice for obtaining standard 650 bp cytochrome c oxidase subunit I (COI) barcodes. However, DNA degradation/fragmentation makes it difficult to obtain a full-length barcode from old specimens. Mini-barcodes of 130 bp from the standard ...

Journal: :Molecular ecology resources 2015
Niels Van Steenkiste Sean A Locke Magalie Castelin David J Marcogliese Cathryn L Abbott

Digeneans and cestodes are species-rich taxa and can seriously impact human health, fisheries, aqua- and agriculture, and wildlife conservation and management. DNA barcoding using the COI Folmer region could be applied for species detection and identification, but both 'universal' and taxon-specific COI primers fail to amplify in many flatworm taxa. We found that high levels of nucleotide varia...

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