MOTIVATION The Physiome Project was established in 1997 to develop tools to facilitate international collaboration in the physiological sciences and the sharing of biological models and experimental data. The CellML language was developed to represent and exchange mathematical models of biological processes. CellML models can be very complicated, making it difficult to interpret the underlying ...

SUMMARY The CellML Model Repository provides free access to over 330 biological models. The vast majority of these models are derived from published, peer-reviewed papers. Model curation is an important and ongoing process to ensure the CellML model is able to accurately reproduce the published results. As the CellML community grows, and more people add their models to the repository, model ann...

MOTIVATION CellML is an implementation-independent model description language for specifying and exchanging biological processes. The focus of CellML is the representation of mathematical formulations of biological processes. The language captures the mathematical and model building constructs well, but does not lend itself to capturing the biology these models represent. RESULTS This article...

The development of standards for encoding mathematical models is an important component of model building and model sharing among scientists interested in understanding multi-scale physiological processes. CellML provides such a standard, particularly for models based on biophysical mechanisms, and a substantial number of models are now available in the CellML Model Repository. However, there i...

Motivation: CellML is an implementation-independent model description language for specifying and exchanging biological processes. The focus of CellML is the representation of mathematical formulations of biological processes. The language captures the mathematical and model building constructs well but does not lend itself to capturing the biology these models represent. Results: This paper de...

Summary: CellML and SBML are XML-based languages for storage and exchange of molecular biological and physiological reaction models. They use very similar subsets of MathML to specify the mathematical aspects of the models. CellML2SBML is implemented as a suite of XSLT stylesheets that, when applied consecutively, convert models expressed in CellML into SBML without significant loss of informat...

We have detected an ionized nebula around the hot DO white dwarf KPD0005+5106, and used the [O III]/Hα ratios and nebular velocities to separate this nebula from the background H II region of AO Cas. The angular size of the [O III] nebula of KPD0005+5106 is∼ 3. The velocity of this nebula is similar to those of the local interstellar H I gas and the interstellar/circumstellar absorption lines i...

UNLABELLED CellML and SBML are XML-based languages for storage and exchange of molecular biological and physiological reaction models. They use very similar subsets of MathML to specify the mathematical aspects of the models. CellML2SBML is implemented as a suite of XSLT stylesheets that, when applied consecutively, convert models expressed in CellML into SBML without significant loss of inform...

CellML is an XML-based file format for describing mathematical models, with the aim of simplifying the creation, exchange and reuse of models. There are a number of software tools for modelling biological processes that can read and write CellML files. In this paper, we describe the ability of the OpenCell modelling environment to export CellML files to a number of different programming languag...