نتایج جستجو برای: PlutoF

تعداد نتایج: 13  

2017
Veljo Runnel Marko Peterson Allan Zirk

Background Online systems for observation reporting by citizen scientists have been operating for many years. iNaturalist (California Academy of Sciences 2016), eBird (Cornell Lab of Ornithology 2016) and Observado (Observation International 2016) are well-known international systems, Artportalen (Swedish Species Information Centre 2016) and Artsobservasjoner (Norwegian Biodiversity Information...

2010
Kessy Abarenkov Leho Tedersoo R. Henrik Nilsson Kai Vellak Irja Saar Vilmar Veldre Erast Parmasto Marko Prous Anne Aan Margus Ots Olavi Kurina Ivika Ostonen Janno Jõgeva Siim Halapuu Kadri Põldmaa Märt Toots Jaak Truu Karl-Henrik Larsson Urmas Kõljalg

DNA sequences accumulating in the International Nucleotide Sequence Databases (INSD) form a rich source of information for taxonomic and ecological meta-analyses. However, these databases include many erroneous entries, and the data itself is poorly annotated with metadata, making it difficult to target and extract entries of interest with any degree of precision. Here we describe the web-based...

Journal: :Biodiversity Information Science and Standards 2019

Journal: :Biodiversity Information Science and Standards 2021

Third-party annotations are a valuable resource to improve the quality of public DNA sequences. For example, sequences in International Nucleotide Sequence Databases Collaboration (INSDC) often lack important features like taxon interactions, species level identification, information associated with habitat, locality, country, coordinates, etc. Therefore, initiatives mine additional from public...

2015
Pravin Dudhagara Anjana Ghelani Sunil Bhavsar Shreyas Bhatt

The data in this article contains the sequences of fungal Internal Transcribed Spacer (ITS) and 18S rRNA gene from a metagenome of Lonar soda lake, India. Sequences were amplified using fungal specific primers, which amplified the amplicon lined between the 18S and 28S rRNA genes. Data were obtained using Fungal tag-encoded FLX amplicon pyrosequencing (fTEFAP) technique and used to analyze fung...

Journal: :Fungal Diversity 2021

Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases global soil fungal dataset the Global Soil Mycobiome consortium (GSMc) to boost further research in diversity, biogeography macroecology. The comprises 722,682 operational taxonomic units (OTUs) derived from Pac...

Journal: :Biodiversity Information Science and Standards 2022

The advancements in sequencing technologies have greatly contributed to the documentation of Earth’s biodiversity. However, for exploring full potential molecular resources biodiversity, there needs be a good linkage between sequence data and its biological source, contributing network connected biodiversity research cycle. This requires foundation well-structured accessible annotations reposit...

2011
Leho Tedersoo Kessy Abarenkov R. Henrik Nilsson Arthur Schüssler Gwen-Aëlle Grelet Petr Kohout Jane Oja Gregory M. Bonito Vilmar Veldre Teele Jairus Martin Ryberg Karl-Henrik Larsson Urmas Kõljalg

Sequence analysis of the ribosomal RNA operon, particularly the internal transcribed spacer (ITS) region, provides a powerful tool for identification of mycorrhizal fungi. The sequence data deposited in the International Nucleotide Sequence Databases (INSD) are, however, unfiltered for quality and are often poorly annotated with metadata. To detect chimeric and low-quality sequences and assign ...

2017
Alexander Ordynets Anton Savchenko Alexander Akulov Eugene Yurchenko Vera F Malysheva Urmas Kõljalg Josef Vlasák Karl-Henrik Larsson Ewald Langer

Background Fungi play crucial roles in ecosystems and are among the species-richest organism groups on Earth. However, knowledge on their occurrence lags behind the data for animals and plants. Recent analyses of fungal occurrence data from Western, Central and Northern Europe provided important insights into response of fungi to global warming. The consequences of the global changes for biodiv...

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