A very stiff finitely extensible nonlinear elastic (FENE)-Fraenkel spring is proposed to replace the rigid rod in the bead-rod model. This allows the adoption of a fast predictor-corrector method so that large time steps can be taken in Brownian dynamics (BD) simulations without over- or understretching the stiff springs. In contrast to the simple bead-rod model, BD simulations with beads and F...

We have examined a new method for generating coarse-grained models of polymers. The resulting models consist of bead-spring chains with the spring force law taken from the force-extension behavior in the constant extension ensemble. This method, called the polymer ensemble transformation method, is applied to the freely jointed chain. The resulting model illustrates why current bead-spring chai...

in hard disk drives (hdd), it is necessary to decrease the flying height (fh) between the head and the disk (currently, fh is around 3-5 nm) so as to increase recording densities. retaining the solid lubricant has become a difficult proposition owing to intermittent contact between the surfaces. ztmd and z are used as solid lubricant to lubricate these interfaces. in this paper, the behavior of...

e have developed a new spring force law which can be used in bead-spring chain models of the orm-like chain. The bead-spring chain has no bending potentials between the springs, and so iffers from the current models only in the functional form of the force law. This new model can ccurately represent a chain that contains many persistence lengths even if each spring represents nly a few persiste...

We present a scheme for coarse-graining hydrodynamic interactions in an isolated flexible homopolymer molecule in solution. In contrast to the conventional bead-spring model that employs spherical beads of fixed radii to represent the hydrodynamic characteristics of coarse-grained segments, we show that our procedure leads naturally to a discrete model of a polymer molecule as a chain of orient...

A unifying theoretical framework for analyzing stochastic data from single-particle tracking (SPT) in viscoelastic materials is presented. A generalization of the bead-spring model for linear polymers is developed from a molecular point of view and from the standpoint of phenomenological linear viscoelasticity. The hydrodynamic interaction in the former is identiied as the dashpots in the latte...