Molecular dynamic simulation is a powerful method that monitors all variations in the atomic level in explicit solvent. By this method we can calculate many chemical and biochemical properties of large scale biological systems. In this work all-atom molecular dynamics simulation of polyalanine (PA) was investigated in the presence of 0.224, 0.448, 0.673, 0.897 and 1.122 M of guanidinium chlorid...

This paper presents the thermal vibration analysis of double-layer graphene sheet embedded in polymer elastic medium, using the plate theory and nonlocal continuum mechanics for small scale effects. The graphene is modeled based on continuum plate theory and the axial stress caused by the thermal effects is also considered. Nonlocal governing equations of motion for this double-layer graphene s...

Interatomic potentials, which describe interactions between elements of nanosystems, are crucial in theoretical study of their physical properties. We focus on two well known empirical potentials, i.e. Tersoff's and Brenner's potentials, and compare their performance in calculation of thermal transport in carbon nanotubes. In this way, we study the temperature and diameter dependence of thermal...

In this work, the thermal reaction of aluminum (Al) and nickel oxide (NiO) was investigated by molecular dynamics simulations. Some effective features of reaction such as reaction temperature, the reaction mechanism, and diffusion rate of oxygen into aluminum structure were studied. ReaxFF force field was performed to study the Al/NiO thermite reaction behavior at five different temperatures (5...

We investigate the dissipative dynamics of a quantum critical system in contact with a thermal bath, focusing on the response of the system to a sudden change of the bath temperature, in analogy to studies of aging. The specific example of the XY model in a transverse magnetic field whose spins are locally coupled to a set of bosonic baths is considered. We analyze the spin-spin correlations an...

In Thermal Field Dynamics, thermal states are obtained from restrictions of vacuum states on a doubled field algebra. It is shown that the suitably doubled Fock representations of the Heisenberg algebra do not need to be introduced by hand but can be canonically handed down from deformations of the extended Heisenberg bialgebra. No artificial redefinitions of fields are necessary to obtain the ...

This paper presents the thermal vibration analysis of double-layer graphene sheet embedded in polymer elastic medium, using the plate theory and nonlocal continuum mechanics for small scale effects. The graphene is modeled based on continuum plate theory and the axial stress caused by the thermal effects is also considered. Nonlocal governing equations of motion for this double-layer graphene s...