نتایج جستجو برای: ssr genotyping

تعداد نتایج: 29420  

2013
Samuel E. Fox Justin Preece Jeffrey A. Kimbrel Gina L. Marchini Abigail Sage Ken Youens-Clark Mitchell B. Cruzan Pankaj Jaiswal

UNLABELLED PREMISE OF THE STUDY We report the de novo assembly and characterization of the transcriptomes of Brachypodium sylvaticum (slender false-brome) accessions from native populations of Spain and Greece, and an invasive population west of Corvallis, Oregon, USA. • METHODS AND RESULTS More than 350 million sequence reads from the mRNA libraries prepared from three B. sylvaticum genot...

Journal: :Cellular & molecular biology letters 2004
Monika Rakoczy-Trojanowska Hanna Bolibok

Microsatellites (SSR--simple sequence repeats, STR--short tandem repeats, SSLP--simple sequence length polymorphism, VNTR--variable number of tandem repeats) are the class of repetitive DNA sequences present in all living organisms. Particular characteristics of microsatellites, such as their presence in the genomes of all living organisms, high level of allelic variation, co-dominant mode of i...

2017
Gao-Feng Qiu Liang-Wei Xiong Zhi-Ke Han Zhi-Qiang Liu Jian-Bin Feng Xu-Gan Wu Yin-Long Yan Hong Shen Long Huang Li Chen

The Chinese mitten crab Eriocheir sinensis is the most economically important cultivated crab species in China, and its genome has a high number of chromosomes (2n = 146). To obtain sufficient markers for construction of a dense genetic map for this species, we employed the recently developed specific-locus amplified fragment sequencing (SLAF-seq) method for large-scale SNPs screening and genot...

2014
Manish K. Pandey Hari D. Upadhyaya Abhishek Rathore Vincent Vadez M. S. Sheshshayee Manda Sriswathi Mansee Govil Ashish Kumar M. V. C. Gowda Shivali Sharma Falalou Hamidou V. Anil Kumar Pawan Khera Ramesh S. Bhat Aamir W. Khan Sube Singh Hongjie Li Emmanuel Monyo H. L. Nadaf Ganapati Mukri Scott A. Jackson Baozhu Guo Xuanqiang Liang Rajeev K. Varshney

Peanut is an important and nutritious agricultural commodity and a livelihood of many small-holder farmers in the semi-arid tropics (SAT) of world which are facing serious production threats. Integration of genomics tools with on-going genetic improvement approaches is expected to facilitate accelerated development of improved cultivars. Therefore, high-resolution genotyping and multiple season...

2011
Shanmugapriya Arumugasundaram Modhumita Ghosh Sivakumar Veerasamy Yasodha Ramasamy

Eucalyptus camaldulensis and E. tereticornis are closely related species commonly cultivated for pulp wood in many tropical countries including India. Understanding the genetic structure and linkage disequilibrium (LD) existing in these species is essential for the improvement of industrially important traits. Our goal was to evaluate the use of simple sequence repeat (SSR) loci for species dis...

Journal: :Journal of neurology, neurosurgery, and psychiatry 2002
A Reitz A Curt B Schurch

OBJECTIVES The sympathetic skin response (SSR) is a technique to assess the sympathetic cholinergic pathways, and it can be used to study the central sympathetic pathways in spinal cord injury (SCI). This study investigated the capacity of the isolated spinal cord to generate an SSR, and determined the relation between SSR, levels of spinal cord lesion, and supraspinal connections. METHODS Pa...

2009
Tun-Wen Pai Chien-Ming Chen Meng-Chang Hsiao Ronshan Cheng Wen-Shyong Tzou Chin-Hua Hu

Simple sequence repeats (SSRs) play important roles in gene regulation and genome evolution. Although there exist several online resources for SSR mining, most of them only extract general SSR patterns without providing functional information. Here, an online search tool, CG-SSR (Comparative Genomics SSR discovery), has been developed for discovering potential functional SSRs from vertebrate ge...

2009
Sushil Kumar Shakyawar Balwindar Kumar Joshi Dinesh Kumar

SSR (simple sequence repeats) are ubiquitously abundant in genomes. In organellar mitochondrial genome of animals, its distribution, size dynamics and effectiveness for phylogenetic relationship have not been understood. Present investigation reveals organisation of SSR in genic and intergenic region, its length and repeat motif dynamics, extent of conservation of flanking regions, appropriaten...

Journal: :American journal of physiology. Regulatory, integrative and comparative physiology 2007
Claudine Serradeil-Le Gal Danièle Raufaste Sylvain Derick Jörg Blankenstein John Allen Brigitte Pouzet Marc Pascal Jean Wagnon Maria Angeles Ventura

[(3)H]SSR-149415 is the first tritiated nonpeptide vasopressin V(1b) receptor (V(1b)R) antagonist ligand. It was used for studying rodent (mouse, rat, hamster) and human V(1b)R from native or recombinant origin. Moreover, a close comparison between the human and the mouse V(1b)R was performed using SSR-149415/[(3)H]SSR-149415 in binding and functional studies in vitro. [(3)H]SSR-149415 binding ...

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