BACKGROUND & OBJECTIVES PFGE, rep-PCR, and MLST are widely used to identify related bacterial isolates and determine epidemiologic associations during outbreaks. This study was performed to compare the ability of repetitive sequence-based PCR (rep-PCR) and pulsed-field gel electrophoresis (PFGE) to determine the genetic relationships among Escherichia coli isolates assigned to various sequence ...

PURPOSE To evaluate the abilities of these subtyping methods, we distinguished Salmonella Enteritidis (S. Enteritidis) isolated from food products and human clinical samples between 2009 and 2010 in Seoul using five subtyping methods. METHODS We determined the subtypes of 20 S. Enteritidis isolates from food and human sources using phage typing, antimicrobial susceptibility, pulsed-field gel ...

background and objective: shigella species belong to the family enterobacteriaceae, which cause dysentery with abdominal pain and tenesmus in human. our country is one of the endemic and occasional epidemic areas of the disease. in the present study, repetitive extragenic palindromic polymerase chain reaction (rep-pcr) technique that has high differentiation and specificity power compared to ph...

conclusions according to the findings of our study, there were diverse and high-level resistant p. aeruginosa strains in the major burn center in khuzestan. therefore, we faced troubles controlling the diverse p. aeruginosa clones in the burn patients. methods in a cross sectional study, a total of 75 strains of p. aeruginosa were isolated from burn patients at taleghani hospital, which is the ...

Pulsed-field gel electrophoresis (PFGE) is considered the "gold standard" for molecular epidemiological study. Repetitive extragenic palindromic PCR (rep-PCR) is less time-consuming and more suitable for analyzing large numbers of bacterial strains in human populations. PFGE and rep-PCR provide comparable genotyping results for investigating Streptococcus mutans diversity and transmission.

Edwardsiella tarda is an enterobacterial fish pathogen that causes mortality in various fish species worldwide. In this study, we analyzed the intraspecific variability in a collection of E. tarda strains isolated from turbot. To do this we employed 4 polymerase chain reaction (PCR)-based methods: (1) random amplified polymorphic DNA (RAPD), (2) enterobacterial repetitive intergenic consensus-P...