نتایج جستجو برای: exome

تعداد نتایج: 8594  

2014
Bart J. G. Broeckx Frank Coopman Geert E. C. Verhoeven Valérie Bavegems Sarah De Keulenaer Ellen De Meester Filip Van Niewerburgh Dieter Deforce

Whole exome sequencing is a technique that aims to selectively sequence all exons of protein-coding genes. A canine whole exome sequencing enrichment kit was designed based on the latest canine reference genome (build 3.1.72). Its performance was tested by sequencing 2 exome captures, each consisting of 4 pre-capture pooled, barcoded Illumina libraries on an Illumina HiSeq 2500. At an average s...

Journal: :Human molecular genetics 2015
Ursula M Schick Paul L Auer Joshua C Bis Honghuang Lin Peng Wei Nathan Pankratz Leslie A Lange Jennifer Brody Nathan O Stitziel Daniel S Kim Christopher S Carlson Myriam Fornage Jeffery Haessler Li Hsu Rebecca D Jackson Charles Kooperberg Suzanne M Leal Bruce M Psaty Eric Boerwinkle Russell Tracy Diego Ardissino Svati Shah Cristen Willer Ruth Loos Olle Melander Ruth Mcpherson Kees Hovingh Muredach Reilly Hugh Watkins Domenico Girelli Pierre Fontanillas Daniel I Chasman Stacey B Gabriel Richard Gibbs Deborah A Nickerson Sekar Kathiresan Ulrike Peters Josée Dupuis James G Wilson Stephen S Rich Alanna C Morrison Emelia J Benjamin Myron D Gross Alex P Reiner

C-reactive protein (CRP) concentration is a heritable systemic marker of inflammation that is associated with cardiovascular disease risk. Genome-wide association studies have identified CRP-associated common variants associated in ∼25 genes. Our aims were to apply exome sequencing to (1) assess whether the candidate loci contain rare coding variants associated with CRP levels and (2) perform a...

2013
Kye Hwa Lee Jae Hyeun Lim Ju Han Kim

In cancer genome studies, the annotation of newly detected oncogene/tumor suppressor gene candidates is a challenging process. We propose using concept lattice analysis for the annotation and interpretation of genes having candidate somatic mutations in whole-exome sequencing in acute myeloid leukemia (AML). We selected 45 highly mutated genes with whole-exome sequencing in 10 normal matched sa...

2012

Introduction Next-generation DNA sequencing empowers scientists to identify genetic variations associated with human disease at higher resolution and greater sensitivity than previously possible. Two approaches are commonly employed -exome sequencing and whole genome sequencing. Exome sequencing targets protein-coding regions comprising approximately 1% of the human genome, while whole genome s...

Journal: :Genomics 2010
Daniel Summerer Nadine Schracke Haiguo Wu Yang Cheng Stephan Bau Cord F Stähler Peer F Stähler Markus Beier

Sequence capture methods for targeted next generation sequencing promise to massively reduce cost of genomics projects compared to untargeted sequencing. However, evaluated capture methods specifically dedicated to biologically relevant genomic regions are rare. Whole exome capture has been shown to be a powerful tool to discover the genetic origin of disease and provides a reduction in target ...

2011
Seung-Hoan Choi Chunyu Liu Josée Dupuis Mark W Logue Gyungah Jun

To date, genome-wide association studies have yielded discoveries of common variants that partly explain familial aggregation of diseases and traits. Researchers are now turning their attention to less common variants because the price of sequencing has dropped drastically. However, because sequencing of the whole genome in large samples is costly, great care must be taken to prioritize which s...

Journal: :American journal of human genetics 2012
Menachem Fromer Jennifer L Moran Kimberly Chambert Eric Banks Sarah E Bergen Douglas M Ruderfer Robert E Handsaker Steven A McCarroll Michael C O'Donovan Michael J Owen George Kirov Patrick F Sullivan Christina M Hultman Pamela Sklar Shaun M Purcell

Sequencing of gene-coding regions (the exome) is increasingly used for studying human disease, for which copy-number variants (CNVs) are a critical genetic component. However, detecting copy number from exome sequencing is challenging because of the noncontiguous nature of the captured exons. This is compounded by the complex relationship between read depth and copy number; this results from bi...

Journal: :The Journal of bone and joint surgery. American volume 2011
David M Alvarado Jillian G Buchan Christina A Gurnett Matthew B Dobbs

BACKGROUND Few genes responsible for distal arthrogryposis type 1 are known, although genes coding for the proteins in the sarcomere have been implicated in other types of distal arthrogryposis. Cost-effective sequencing methods are now available to examine all genes in the human genome for the purpose of establishing the genetic basis of musculoskeletal disorders. METHODS A multigenerational...

Journal: :Archives of pathology & laboratory medicine 2014
Christina G Loporcaro David J Tester Joseph J Maleszewski Teresa Kruisselbrink Michael J Ackerman

Annually, the sudden death of thousands of young people remains inadequately explained despite medicolegal investigation. Postmortem genetic testing for channelopathies/cardiomyopathies may illuminate a potential cardiac mechanism and establish a more accurate cause and manner of death and provide an actionable genetic marker to test surviving family members who may be at risk for a fatal arrhy...

Journal: :Gastroenterology 2014
Atsuyuki Ikeda Takahiro Shimizu Yuko Matsumoto Yosuke Fujii Yuji Eso Tadashi Inuzuka Aya Mizuguchi Kazuharu Shimizu Etsuro Hatano Shinji Uemoto Tsutomu Chiba Hiroyuki Marusawa

BACKGROUND & AIMS Hepatocellular carcinoma develops in patients with chronic hepatitis or cirrhosis via a stepwise accumulation of various genetic alterations. To explore the genetic basis of development of hepatocellular carcinoma in hepatitis C virus (HCV)-associated chronic liver disease, we evaluated genetic variants that accumulate in nontumor cirrhotic liver. METHODS We determined the w...

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