نتایج جستجو برای: dna mutational analysis

تعداد نتایج: 3221390  

Journal: :PLoS Computational Biology 2005
Rajeev K. Azad Jeffrey G. Lawrence

Parametric methods for identifying laterally transferred genes exploit the directional mutational biases unique to each genome. Yet the development of new, more robust methods--as well as the evaluation and proper implementation of existing methods--relies on an arbitrary assessment of performance using real genomes, where the evolutionary histories of genes are not known. We have used the fram...

Journal: :The Southeast Asian journal of tropical medicine and public health 2003
Veronica Wiley Kevin Carpenter Bruce Bennetts Bridget Wilcken

Computerization within newborn screening programs is a developing issue. To date two basic approaches to data storage have been used: (1) a storage system for babies diagnosed with a disorder, (2) a comprehensive system with long-term details for all patient samples, tests performed, test results and interpretations. It usually provides efficient real-time reports for various clinical and quali...

2007
Eduardo Ruiz-Pesini Marie T. Lott Vincent Procaccio Jason C. Poole Marty C. Brandon Dan Mishmar Christina Yi James Kreuziger Pierre Baldi Douglas C. Wallace

The MITOMAP (http://www.mitomap.org) data system for the human mitochondrial genome has been greatly enhanced by the addition of a navigable mutational mitochondrial DNA (mtDNA) phylogenetic tree of approximately 3000 mtDNA coding region sequences plus expanded pathogenic mutation tables and a nuclear-mtDNA pseudogene (NUMT) data base. The phylogeny reconstructs the entire mutational history of...

2018
Bryan J. Thibodeau Vincent Lavergne Nayana Dekhne Pamela Benitez Mitual Amin Samreen Ahmed Jean L. Nakamura Philip R. Davidson Alice O. Nakamura Inga S. Grills Peter Y. Chen Jessica Wobb George D. Wilson

Purpose Radiation-associated breast angiosarcomas are a rare complication of radiation therapy for breast carcinoma. With relatively little is known about the genetic abnormalities present in these secondary tumors, we examined genomic variation in biospecimens from radiation-associated breast angiosarcomas. Experimental Design Patients were identified that had a previous breast cancer diagno...

2016
Shaojuan Hao Lei Jin Huijun Wang Chenlong Li Fengyun Zheng Duan Ma Tianyu Zhang

Treacher Collins syndrome is an autosomal dominant craniofacial malformation mainly caused by mutations in the TCOF1 gene. Few cases have been observed in the Chinese population. Herein, the authors report the mutational analysis of TCOF1, GSC, and HOXA2 to determine the mutational features of the 3 genes in Chinese patients with Treacher Collins syndrome. Genomic DNA of the patients and their ...

2016
Serena Nik-Zainal Helen Davies Johan Staaf Manasa Ramakrishna Dominik Glodzik Xueqing Zou Inigo Martincorena Ludmil B. Alexandrov Sancha Martin David C. Wedge Peter Van Loo Young Seok Ju Marcel Smid Arie B Brinkman Sandro Morganella Miriam R. Aure Ole Christian Lingjærde Anita Langerød Markus Ringnér Sung-Min Ahn Sandrine Boyault Jane E. Brock Annegien Broeks Adam Butler Christine Desmedt Luc Dirix Serge Dronov Aquila Fatima John A. Foekens Moritz Gerstung Gerrit KJ Hooijer Se Jin Jang David R. Jones Hyung-Yong Kim Tari A. King Savitri Krishnamurthy Hee Jin Lee Jeong-Yeon Lee Yilong Li Stuart McLaren Andrew Menzies Ville Mustonen Sarah O’Meara Iris Pauporté Xavier Pivot Colin A. Purdie Keiran Raine Kamna Ramakrishnan F. Germán Rodríguez-González Gilles Romieu Anieta M. Sieuwerts Peter T Simpson Rebecca Shepherd Lucy Stebbings Olafur A Stefansson Jon Teague Stefania Tommasi Isabelle Treilleux Gert G. Van den Eynden Peter Vermeulen Anne Vincent-Salomon Lucy Yates Carlos Caldas Laura van’t Veer Andrew Tutt Stian Knappskog Benita Kiat Tee Tan Jos Jonkers Åke Borg Naoto T Ueno Christos Sotiriou Alain Viari P. Andrew Futreal Peter J Campbell Paul N. Span Steven Van Laere Sunil R Lakhani Jorunn E. Eyfjord Alastair M. Thompson Ewan Birney Hendrik G Stunnenberg Marc J van de Vijver John W.M. Martens Anne-Lise Børresen-Dale Andrea L. Richardson Gu Kong Gilles Thomas Michael R. Stratton

We analysed whole-genome sequences of 560 breast cancers to advance understanding of the driver mutations conferring clonal advantage and the mutational processes generating somatic mutations. We found that 93 protein-coding cancer genes carried probable driver mutations. Some non-coding regions exhibited high mutation frequencies, but most have distinctive structural features probably causing ...

Journal: :Journal of bacteriology 2009
Yi-Hsing Chen Yuyen Lin Aya Yoshinaga Benazir Chhotani Jenna L Lorenzini Alexander A Crofts Shou Mei Roderick I Mackie Yoshizumi Ishino Isaac K O Cann

Chromosomal DNA replication is dependent on processive DNA synthesis. Across the three domains of life and in certain viruses, a toroidal sliding clamp confers processivity to replicative DNA polymerases by encircling the DNA and engaging the polymerase in protein/protein interactions. Sliding clamps are ring-shaped; therefore, they have cognate clamp loaders that open and load them onto DNA. H...

M. Heshmat M. Monajjemi M. Sadegizadeh S. Irani S.M Atyabi T. Nejadsattari

P53 is one of the gene that has important role in human cell cycle and in the human cancers too.Models of codon substitution make it possible to separate mutational biases in the DNA fromselective constraints on the protein, and offer a great advantage over amino acid models forunderstanding the evolutionary process of proteins and protein-coding DNA sequences. In thiswork, we investigated abou...

Journal: :DNA repair 2006
Caterina Marchetti Sarah A Walker Federico Odreman Alessandro Vindigni Aidan J Doherty Penny Jeggo

DNA ligase IV is an essential protein that functions in DNA non-homologous end-joining, the major mechanism that rejoins DNA double-strand breaks in mammalian cells. LIG4 syndrome represents a human disorder caused by mutations in DNA ligase IV that lead to impaired but not ablated activity. Thus far, five conserved motifs in DNA ligases have been identified. We previously reported G469E as a m...

Journal: :The British journal of ophthalmology 2014
Christopher B Jackson Christoph Neuwirth Dagmar Hahn J-M Nuoffer Stephan Frank Sabina Gallati André Schaller

BACKGROUND/AIM To investigate the underlying pathomechanism in a 33-year-old female Caucasian patient presenting with chronic progressive external ophthalmoplegia (CPEO) plus symptoms. METHODS Histochemical analysis of skeletal muscle and biochemical measurements of individual oxidative phosphorylation (OXPHOS) complexes. Genetic analysis of mitochondrial DNA in various tissues with subsequen...

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