نتایج جستجو برای: cpg island

تعداد نتایج: 66989  

Journal: :Clinical cancer research : an official journal of the American Association for Cancer Research 2009
Katsuhiko Nosho Kaori Shima Natsumi Irahara Shoko Kure Yoshifumi Baba Gregory J Kirkner Li Chen Sumita Gokhale Aditi Hazra Donna Spiegelman Edward L Giovannucci Rudolf Jaenisch Charles S Fuchs Shuji Ogino

PURPOSE DNA methyltransferase-3B (DNMT3B) plays an important role in de novo CpG island methylation. Dnmt3b can induce colon tumor in mice with methylation in specific CpG islands. We hypothesized that cellular DNMT3B level might influence the occurrence of widespread CpG island methylation (i.e., the CpG island methylator phenotype, CIMP) in colon cancer. EXPERIMENTAL DESIGN Utilizing 765 co...

Journal: :Cancer research 2006
Kam-Wing Jair Kurtis E Bachman Hiromu Suzuki Angela H Ting Ina Rhee Ray-Whay Chiu Yen Stephen B Baylin Kornel E Schuebel

A major obstacle toward understanding how patterns of abnormal mammalian cytosine DNA methylation are established is the difficulty in quantitating the de novo methylation activities of DNA methyltransferases (DNMT) thought to catalyze these reactions. Here, we describe a novel method, using native human CpG island substrates from genes that frequently become hypermethylated in cancer, which ge...

Journal: :Genome research 2012
Agustin F Fernandez Yassen Assenov Jose Ignacio Martin-Subero Balazs Balint Reiner Siebert Hiroaki Taniguchi Hiroyuki Yamamoto Manuel Hidalgo Aik-Choon Tan Oliver Galm Isidre Ferrer Montse Sanchez-Cespedes Alberto Villanueva Javier Carmona Jose V Sanchez-Mut Maria Berdasco Victor Moreno Gabriel Capella David Monk Esteban Ballestar Santiago Ropero Ramon Martinez Marta Sanchez-Carbayo Felipe Prosper Xabier Agirre Mario F Fraga Osvaldo Graña Luis Perez-Jurado Jaume Mora Susana Puig Jaime Prat Lina Badimon Annibale A Puca Stephen J Meltzer Thomas Lengauer John Bridgewater Christoph Bock Manel Esteller

Most of the studies characterizing DNA methylation patterns have been restricted to particular genomic loci in a limited number of human samples and pathological conditions. Herein, we present a compromise between an extremely comprehensive study of a human sample population with an intermediate level of resolution of CpGs at the genomic level. We obtained a DNA methylation fingerprint of 1628 ...

Journal: :Genome research 2007
Marcos R H Estécio Pearlly S Yan Ashraf E K Ibrahim Carmen S Tellez Lanlan Shen Tim H-M Huang Jean-Pierre J Issa

An abnormal pattern of DNA methylation occurs at specific genes in almost all neoplasms. The lack of high-throughput methods with high specificity and sensitivity to detect changes in DNA methylation has limited its application for clinical profiling. Here we overcome this limitation and present an improved method to identify methylated genes genome-wide by hybridizing a CpG island microarray w...

Journal: :Biological & pharmaceutical bulletin 2003
Shiro Koizume Takao Sekiya Masahiko Shiraishi

It is well-recognized that DNA methylation causes gene silencing. However, although DNA methylation is closely associated with alterations in chromatin structure, it is not clear whether methylation at a particular locus contributes to the formation of an inactive chromatin structure. In this study, we have investigated the chromatin structure of the CpG island of the human CDH1 gene in cancer ...

2012
Meeshanthini Vijayendran Steven R.H. Beach Jeffrey M. Plume Gene H. Brody Robert A. Philibert

Altered regulation of the serotonin transporter (SLC6A4) is hypothesized to be a key event in many forms of neuropsychiatric illness, yet our understanding of the molecular mechanisms through which changes in gene function could lead to illness remains incomplete. In prior studies, we and others have demonstrated that methylation of CpG residues in the promoter associated CpG island alters SLC6...

Journal: :Endocrine-related cancer 2012
Rachana Agarwal Zhe Jin Jian Yang Yuriko Mori Jee Hoon Song Sahil Kumar Masato Sato Yulan Cheng Alexandru V Olaru John M Abraham Amit Verma Stephen J Meltzer

Although the molecular basis of esophageal adenocarcinoma (EAC) and its precursor, Barrett’s esophagus (BE), have been studied, further insights are needed into early premalignant events. In the current study, we comprehensively identified epigenetically altered genes at various time points during neoplastic progression in BE. We compared global DNA methylation profiles of two groups of BE pati...

Journal: :PLoS Genetics 2008
Heather M. O'Hagan Helai P. Mohammad Stephen B. Baylin

Chronic exposure to inducers of DNA base oxidation and single and double strand breaks contribute to tumorigenesis. In addition to the genetic changes caused by this DNA damage, such tumors often contain epigenetically silenced genes with aberrant promoter region CpG island DNA hypermethylation. We herein explore the relationships between such DNA damage and epigenetic gene silencing using an e...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2004
Charles D Laird Nicole D Pleasant Aaron D Clark Jessica L Sneeden K M Anwarul Hassan Nathan C Manley Jay C Vary Todd Morgan R Scott Hansen Reinhard Stöger

Epigenetic inheritance, the transmission of gene expression states from parent to daughter cells, often involves methylation of DNA. In eukaryotes, cytosine methylation is a frequent component of epigenetic mechanisms. Failure to transmit faithfully a methylated or an unmethylated state of cytosine can lead to altered phenotypes in plants and animals. A central unresolved question in epigenetic...

2010
So Hyun Shin Baek-hui Kim Ja-June Jang Kyung Suk Suh Gyeong Hoon Kang

Promoter CpG island hypermethylation has become recognized as an important mechanism for inactivating tumor suppressor genes or tumor-related genes in human cancers of various tissues. Gene inactivation in association with promoter CpG island hypermethylation has been reported to be four times more frequent than genetic changes in human colorectal cancers. Hepatocellular carcinoma is also one o...

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