Coral reefs, and the unique ecosystems they support, are facing severe threats by human activities and climate change. Our understanding of these threats is hampered by the lack of robust approaches for studying the micro-scale interactions between corals and their environment. Here we present an experimental platform, coral-on-a-chip, combining micropropagation and microfluidics to allow direc...

Coral reef ecosystems thrive in tropical oligotrophic oceans because of the relationship between corals and endosymbiotic dinoflagellate algae called Symbiodinium. Symbiodinium convert sunlight and carbon dioxide into organic carbon and oxygen to fuel coral growth and calcification, creating habitat for these diverse and productive ecosystems. Light is thus a key regulating factor shaping the p...

The structure of coral reef habitat has a pronounced influence on the diversity, composition and abundance of reef-associated fishes. However, the particular features of the habitat that are most critical are not always known. Coral habitats can vary in many characteristics, notably live coral cover, topographic complexity and coral diversity, but the relative effects of these habitat character...

Although ecological assemblages frequently depart from neutral model predictions, these discrepancies have not been unambiguously attributed to neutral theory's core assumption: that community structure is primarily the result of chance variation in birth, death, speciation, and dispersal, rather than the manifestation of demographic differences among species. Using coral communities in Barbado...

As with all coral reef systems, the ecology of Ningaloo Reef is closely linked to water circulation which transport and disperse key material such as nutrients and larvae. Circulation on coral reefs may be driven by a number of forcing mechanisms including waves, tides, wind, and buoyancy effects. Surface waves interacting with reefs have long been known to dominate the currents on many coral r...

Coral disease has emerged over recent decades as a significant threat to coral reef ecosystems, with declines in coral cover and diversity of Caribbean reefs providing an example of the potential impacts of disease at regional scales. If similar trends are to be mitigated or avoided on reefs worldwide, a deeper understanding of the factors underlying the origin and spread of coral diseases and ...

Determining the shape of coral structures is an essential step for coral biologists to classify and compare corals. Currently, coral biologists analyze shape by performing manual measurements on photographs of coral colonies. In this paper we describe an interactive visualization system for measuring coral shapes in a robust and quantitative way. The input of the system is a CT scan of the cora...

An activity landscape model of a compound data set can be rationalized as a graphical representation that integrates molecular similarity and potency relationships. Activity landscape representations of different design are utilized to aid in the analysis of structure-activity relationships and the selection of informative compounds. Activity landscape models reported thus far focus on a single...

The essential oil extracted from the soft coral of Sinularia sp. have been extracted by soxhlet and analyzed by gas chromatography coupled to mass spectrometry (GC–MS). The principal compounds were found to be δ-Cadinene (12.4%), α-terpinene (10.7%) and α-Muurolene (8.3%). It is worth mentioning the presence of sesquiterpenes and diterpenes as main compounds of the essential oil. This is the fi...