نتایج جستجو برای: tmrna

تعداد نتایج: 347  

Journal: :Genome Biology 2003

Journal: :Nucleic Acids Research 1999

2010
Lauris Kaplinski Ott Scheler Sven Parkel Priit Palta Kadri Toome Ants Kurg Maido Remm

BACKGROUND The hybridization of synthetic Streptococcus pneumoniae tmRNA on a detection microarray is slow at 34 degrees C resulting in low signal intensities. RESULTS We demonstrate that adding specific DNA helper oligonucleotides (chaperones) to the hybridization buffer increases the signal strength at a given temperature and thus makes the specific detection of Streptococcus pneumoniae tmR...

Journal: :Nucleic Acids Symposium Series 2002

Journal: :Journal of Bacteriology 2003

Journal: :Nucleic Acids Symposium Series 2009

Journal: :Journal of bacteriology 1990
B K Oh A K Chauhan K Isono D Apirion

The gene for 10Sa RNA, which is a major small, stable RNA in Escherichia coli, is a unique gene in the E. coli chromosome. The 10Sa RNA gene (ssrA) has been located between 2,760 and 2,761 kilobases on the E. coli genome.

Journal: :Journal of bacteriology 2005
Irina A Oussenko Teppei Abe Hiromi Ujiie Akira Muto David H Bechhofer

Four 3'-to-5' exoribonucleases have been identified in Bacillus subtilis: polynucleotide phosphorylase (PNPase), RNase R, RNase PH, and YhaM. Mutant strains were constructed that were lacking PNPase and one or more of the other three ribonucleases or that had PNPase alone. Analysis of the decay of mRNA encoded by seven small, monocistronic genes showed that PNPase was the major enzyme involved ...

Journal: :Nucleic acids research 2001
B Felden C Massire E Westhof J F Atkins R F Gesteland

Bacterial tmRNA mediates a trans-translation reaction, which permits the recycling of stalled ribosomes and probably also contributes to the regulated expression of a subset of genes. Its action results in the addition of a small number of C-terminal amino acids to protein whose synthesis had stalled and these constitute a proteolytic recognition tag for the degradation of these incompletely sy...

2011
Ott Scheler Lauris Kaplinski Barry Glynn Priit Palta Sven Parkel Kadri Toome Majella Maher Thomas Barry Maido Remm Ants Kurg

BACKGROUND We present a comprehensive technological solution for bacterial diagnostics using tmRNA as a marker molecule. A robust probe design algorithm for microbial detection microarray is implemented. The probes were evaluated for specificity and, combined with NASBA (Nucleic Acid Sequence Based Amplification) amplification, for sensitivity. RESULTS We developed a new web-based program SLI...

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