نتایج جستجو برای: illumina hiseq 2000

تعداد نتایج: 178889  

2016
Yu Xiang Dong-Wei Wang Jun-Yi Li Hui Xie Chun-Ling Xu Yu Li

The chrysanthemum foliar nematode (CFN), Aphelenchoides ritzemabosi, is a plant parasitic nematode that attacks many plants. In this study, a transcriptomes of mixed-stage population of CFN was sequenced on the Illumina HiSeq 2000 platform. 68.10 million Illumina high quality paired end reads were obtained which generated 26,817 transcripts with a mean length of 1,032 bp and an N50 of 1,672 bp,...

2016
Spyros Oikonomopoulos Yu Chang Wang Haig Djambazian Dunarel Badescu Jiannis Ragoussis

To assess the performance of the Oxford Nanopore Technologies MinION sequencing platform, cDNAs from the External RNA Controls Consortium (ERCC) RNA Spike-In mix were sequenced. This mix mimics mammalian mRNA species and consists of 92 polyadenylated transcripts with known concentration. cDNA libraries were generated using a template switching protocol to facilitate the direct comparison betwee...

Journal: :BMC Cardiovascular Disorders 2021

Abstract Background CVD is the leading cause of death in T2DM patients. However, few biomarkers have been identified to detect and diagnose early stage T2DM. The aim our study was identify important mRNAs, micro (mi)RNAs SNPs (single nucleotide polymorphisms) that are associated with metabolic cardiovascular disease. Materials methods Expression profiles GWAS data were obtained from Gene Omnibu...

Journal: :International journal of genomics 2016
Bharat Bhusan Patnaik So Young Park Se Won Kang Hee-Ju Hwang Tae Hun Wang Eun Bi Park Jong Min Chung Dae Kwon Song Changmu Kim Soonok Kim Jae Bong Lee Heon Cheon Jeong Hong Seog Park Yeon Soo Han Yong Seok Lee

Vespa mandarinia found in the forests of East Asia, including Korea, occupies the highest rank in the arthropod food web within its geographical range. It serves as a source of nutrition in the form of Vespa amino acid mixture and is listed as a threatened species, although no conservation measures have been implemented. Here, we performed de novo assembly of the V. mandarinia transcriptome by ...

2016
Daniela Vallejo Pablo Andrés Gutiérrez

RESUMEN Potato virus S (PVS) is a prevalent virus in potato fields in Colombia and the rest of the world. PVS has been classified into two separate lineages, PVS (Ordinary) and PVS (Andean), which are genetically distinct. In this study, the complete genome sequence of a new PVS isolate (PVS_Antioquia) was obtained using High-throughput sequencing (Illumina HiSeq-2000) from tuber sprouts of Sol...

2016
Chuansong Zhan Xiaohua Li Zeying Zhao Tewu Yang Xuekui Wang Biaobiao Luo Qiyun Zhang Yanru Hu Xuebo Hu

BACKGROUND Anemone flaccida Fr. Shmidt (Ranunculaceae), commonly known as 'Di Wu' in China, is a perennial herb with limited distribution. The rhizome of A. flaccida has long been used to treat arthritis as a tradition in China. Studies disclosed that the plant contains a rich source of triterpenoid saponins. However, little is known about triterpenoid saponins biosynthesis in A. flaccida. RE...

Journal: :BMC Genomics 2021

Abstract Background Miscanthus sinensis Andersson is a perennial grass that exhibits remarkable lignocellulose characteristics suitable for sustainable bioenergy production. However, knowledge of the genetic resources this species relatively limited, which considerably hampers further work on its biology and improvement. Results In study, through analyzing transcriptome mixed samples leaves ste...

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