Protein-DNA interactions are the core of cell’s molecular machinery. For a long time, conventional biochemical methods served as powerful investigatory basis protein-DNA and target search mechanisms. Currently single-molecule (SM) techniques have emerged complementary tool for studying these revealed plenty previously obscured mechanistic details. In comparison to traditional ones, SM allow dir...

The gram-positive bacterium Bacillus licheniformis exhibits obvious selective utilization on carbon sources. This process is mainly governed by the global regulator catabolite control protein A (CcpA), which can recognize and bind to multiple target genes that are widely distributed in metabolic pathways. Although DNA-binding domain of CcpA has been predicted, influence key amino acids gene rec...

Four independent, spontaneous mutants of the adenovirus type 2-simian virus 40 hybrid Ad2+ND3 that allow efficient growth in monkey cells were isolated previously (C. W. Anderson, Virology 111:263-269, 1981). All four mutations have been mapped within the coding sequence for the adenovirus DNA-binding protein by marker rescue analysis. DNA sequence analysis of a region of ca. 1,000 base pairs s...

Geminivirus replication initiator protein (Rep) is a multifunctional viral required for replication. During the process of replication, Rep acts as site- and strand-specific endonuclease, ligase, ATPase, helicase. B' motif β-hairpin loop geminivirus are conserved important Rep-mediated helicase activity To dissect roles various amino acid residues in its unwinding DNA, we investigated eight nea...

The NF-κB family of transcription factor is a central mediator immune and imflammatory responses. functions as dimer recognize DNA through the two N-terminal domains (NTDs). Previous hydrogen-deuterium exchange mass spectrometry, stopped-flow experiments molecular dynamics simulations suggested NTDs can undergo relative motions which plays an important role in kinetics association dissociation....

host innate immunity can affect the clinical outcomes of helicobacter pylori infection, including gastritis, gastric ulcer, gastric adenocarcinoma, and malt lymphoma. nucleotide binding oligomerization domain (nod)-1 and -2 are two molecules of innate immunity which are involved in the host defense against h. pylori . this study aimed to evaluate the effect of the expression level of nod1 and n...

host innate immunity can affect the clinical outcomes of helicobacter pylori infection, including gastritis, gastric ulcer, gastric adenocarcinoma, and malt lymphoma. nucleotide binding oligomerization domain (nod)-1 and -2 are two molecules of innate immunity which are involved in the host defense against h. pylori . this study aimed to evaluate the effect of the expression level of nod1 and n...

Abstract Abnormally formed FUS/EWS/TAF15 (FET) fusion oncoproteins are essential oncogenic drivers in many human cancers. Interestingly, at the molecular level, they also form biomolecular condensates specific loci. However, how these lead to gene transcription and features encoded DNA element regulate condensate formation remain unclear. Here, we develop an vitro single-molecule assay visualiz...