نتایج جستجو برای: روش ssr

تعداد نتایج: 375308  

Journal: :Nucleic acids research 2001
M J Hayden P J Sharp

We describe a technique, sequence-tagged microsatellite profiling (STMP), to rapidly generate large numbers of simple sequence repeat (SSR) markers from genomic or cDNA. This technique eliminates the need for library screening to identify SSR-containing clones and provides an approximately 25-fold increase in sequencing throughput compared to traditional methods. STMP generates short but charac...

2013
Simone Georges El Khouri Miraglia Mariana Matera Veras Luis Fernando Amato-Lourenço Fernando Rodrigues-Silva Paulo Hilário Nascimento Saldiva

OBJECTIVES In order to assess if ambient air pollution in urban areas could be related to alterations in male/female ratio this study objectives to evaluate changes in ambient particulate matter (PM10) concentrations after implementation of pollution control programmes in São Paulo city and the secondary sex ratio (SRR). DESIGN AND METHODS A time series study was conducted. São Paulo's distri...

Journal: :The Journal of heredity 2011
Dilpreet S Riar Sachin Rustgi Ian C Burke Kulvinder S Gill Joseph P Yenish

Prickly lettuce (Lactuca serriola L.) is a problematic weed of Pacific Northwest and recently developed resistance to the auxinic herbicide 2,4-D. There are no publically available simple sequence repeat (SSR) markers to tag 2,4-D resistance genes in L. serriola. Therefore, a study was conducted to develop SSR markers from expressed sequence tags (ESTs) of 5 Lactuca species. A total of 15,970 S...

2017
Brandon Pickett Justin Miller Perry G. Ridge

Motivation One of the main challenges with bioinformatics software is that the size and complexity of datasets necessitate trading speed for accuracy, or completeness. To combat this problem of computational complexity, a plethora of heuristic algorithms have arisen that report a 'good enough' solution to biological questions. However, in instances such as Simple Sequence Repeats (SSRs), a 'goo...

2013
Sachiko N. Isobe Hideki Hirakawa Shusei Sato Fumi Maeda Masami Ishikawa Toshiki Mori Yuko Yamamoto Kenta Shirasawa Mitsuhiro Kimura Masanobu Fukami Fujio Hashizume Tomoko Tsuji Shigemi Sasamoto Midori Kato Keiko Nanri Hisano Tsuruoka Chiharu Minami Chika Takahashi Tsuyuko Wada Akiko Ono Kumiko Kawashima Naomi Nakazaki Yoshie Kishida Mitsuyo Kohara Shinobu Nakayama Manabu Yamada Tsunakazu Fujishiro Akiko Watanabe Satoshi Tabata

The cultivated strawberry (Fragaria × ananassa) is an octoploid (2n = 8x = 56) of the Rosaceae family whose genomic architecture is still controversial. Several recent studies support the AAA'A'BBB'B' model, but its complexity has hindered genetic and genomic analysis of this important crop. To overcome this difficulty and to assist genome-wide analysis of F. × ananassa, we constructed an integ...

2013
Lidan Sun Weiru Yang Qixiang Zhang Tangren Cheng Huitang Pan Zongda Xu Jie Zhang Chuguang Chen

Because of its popularity as an ornamental plant in East Asia, mei (Prunus mume Sieb. et Zucc.) has received increasing attention in genetic and genomic research with the recent shotgun sequencing of its genome. Here, we performed the genome-wide characterization of simple sequence repeats (SSRs) in the mei genome and detected a total of 188,149 SSRs occurring at a frequency of 794 SSR/Mb. Mono...

2015
Sandra Sittenthaler Eva Traut-Mattausch Christina Steindl Eva Jonas

This paper describes the construction and empirical evaluation of an instrument for measuring state reactance, the Salzburger State Reactance (SSR) Scale. The results of a confirmatory factor analysis supported a hypothesized three-factor structure: experience of reactance, aggressive behavioral intentions, and negative attitudes. Correlations with divergent and convergent measures support the ...

Journal: :Genetics and molecular research : GMR 2010
K Y Xu S H Wang L Xi Q J Wang C Dong J Y Zhang S C Qu Z Zhang

We developed a straightforward, rapid, and inexpensive method to determine transgene copy number in tobacco. The plasmid (pSSRCopy) used for tobacco transformation contains a simple sequence repeat (SSR) locus, PT1199, which was partially deleted in the middle, a homogenous SSR locus in tobacco K326. A 168-bp segment of the cloned PT1199 was shortened to 95 bp by deleting a 73-bp internal fragm...

2015
Rui Zheng Gen Li Jun Liang

TCSC (Thyristor-Controlled Series Compensator) has been used in modern power systems to increase power transfer and system stability. Besides, due to its controllable feature, TCSC has been used to work as a solution to sub-synchronous resonance (SSR) problems. However, it is not clear so far whether TCSC’s inherent characteristic can avoid SSR and its effectiveness for SSR damping. In this pap...

Journal: :Nucleic Acids Research 2006
Erica G. Jewell Andrew Robinson David Savage Timothy A. Erwin Christopher G. Love Geraldine A. C. Lim Xi Li Jacqueline Batley German C. Spangenberg David Edwards

Simple sequence repeat (SSR) molecular genetic markers have become important tools for a broad range of applications such as genome mapping and genetic diversity studies. SSRs are readily identified within DNA sequence data and PCR primers can be designed for their amplification. These PCR primers frequently cross amplify within related species. We report a web-based tool, SSR Primer, that inte...

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