نتایج جستجو برای: ssrs

تعداد نتایج: 1562  

2013
Stacey L. Lance Cara N. Love Schyler O. Nunziata Jason R. O’Bryhim David E. Scott R. Wesley Flynn Kenneth L. Jones

Development and optimization of novel species-specific microsatellites, or simple sequence repeats (SSRs) remains an important step for studies in ecology, evolution, and behavior. Numerous approaches exist for identifying new SSRs that vary widely in terms of both time and cost investments. A recent approach of using paired-end Illumina sequence data in conjunction with the bioinformatics pipe...

2010
Sumit G Gandhi Praveen Awasthi Yashbir S Bedi

Simple sequence repeats (SSRs) are present abundantly in most eukaryotic genomes. They affect several cellular processes like chromatin organization, regulation of gene activity, DNA repair, DNA recombination, etc. Though considerable data exists on using nuclear SSRs to infer phylogenetic relationships, the potential of chloroplast microsatellites (cpSSR), in this regard, remains largely unexp...

Journal: :Molecular ecology resources 2012
Mark R Lesser Thomas L Parchman C Alex Buerkle

With the advent of next generation sequencing technologies, transcriptome level sequence collections are arising as prominent resources for the discovery of gene-based molecular markers. In a previous study more than 15,000 simple sequence repeats (SSRs) in expressed sequence tag (EST) sequences resulting from 454 pyrosequencing of Pinus contorta cDNA were identified. From these we developed PC...

2011
Almudena Capilla Paula Pazo-Alvarez Alvaro Darriba Pablo Campo Joachim Gross

BACKGROUND One common criterion for classifying electrophysiological brain responses is based on the distinction between transient (i.e. event-related potentials, ERPs) and steady-state responses (SSRs). The generation of SSRs is usually attributed to the entrainment of a neural rhythm driven by the stimulus train. However, a more parsimonious account suggests that SSRs might result from the li...

2016
Jin-shuang Zheng Cheng-zhen Sun Shu-ning Zhang Xi-lin Hou Guusje Bonnema

A significant fraction of the nuclear DNA of all eukaryotes is comprised of simple sequence repeats (SSRs). Although these sequences are widely used for studying genetic variation, linkage mapping and evolution, little attention had been paid to the chromosomal distribution and cytogenetic diversity of these sequences. In this paper, we report the distribution characterization of mono-, di-, an...

2011
Rajender Singh Sonia Sheoran Pradeep Sharma Ravish Chatrath

The abundance and inherent potential for variations in simple sequence repeats (SSRs) or microsatellites resulted in valuable source for genetic markers in eukaryotes. We describe the organization and abundance of SSRs in fungus Fusarium graminearum (causative agent for Fusarium head blight or head scab of wheat). We identified 1705 SSRs of various nucleotide repeat motifs in the sequence datab...

2016
Giancarlo Pellegrino Onur Catakoglu Davide Balzarotti Christian Rossow

More and more web applications rely on server-side requests (SSRs) to fetch resources (such as images or even entire webpages) from user-provided URLs. As for many other web-related technologies, developers were very quick to adopt SSRs, even before their consequences for security were fully understood. In fact, while SSRs are simple to add from an engineering point of view, in this paper we sh...

2011
Xiaolian Liu Wei Luo Cong Zeng Weimin Wang Zexia Gao

In this study, 23 genomic microsatellite DNA markers and 17 express sequence tag (EST)-derived microsatellites were developed and characterized using the fast isolation by AFLP of sequences containing repeats (FIASCO) method and data mining from public EST databases of mandarin fish (Siniperca chuatsi). These polymorphic microsatellite markers were then tested for polymorphism in a wild S. chua...

2012
ChangXu Tian XuFang Liang Min Yang HeZi Zheng YaQi Dou Liang Cao

We described and characterized 11 expressed sequence tag (EST)-derived simple sequence repeats (SSR) and seven genomic (G)-derived SSRs in Coreoperca whiteheadi Boulenger. The EST-SSRs comprised 62.2% di-nucleotide repeats, 32.2% tri-nucleotide repeats and 5.5% tetra-nucleotide repeats, whereas the majority of the G-SSRs were tri-nuleotide repeats (81.4%). The number of alleles for the 18 loc...

Journal: :PLoS ONE 2007
Martha T. Hamblin Marilyn L. Warburton Edward S. Buckler

While Simple Sequence Repeats (SSRs) are extremely useful genetic markers, recent advances in technology have produced a shift toward use of single nucleotide polymorphisms (SNPs). The different mutational properties of these two classes of markers result in differences in heterozygosities and allele frequencies that may have implications for their use in assessing relatedness and evaluation of...

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