objective(s): ten-eleven translocation (tet) family members have been shown to be involved in the development of many tumors. however, the biological role of the tet family and its mechanism of action in colorectal carcinogenesis and progression remain poorly understood. materials and methods:we measured the expression levels of tet family members in colorectal cancer (crc) specimens, in the co...

background: hearing loss (hl) is the most frequent neurosensory impairment. hl is highly heterogeneous defect. this disorder affects 1 out of 500 newborns. this study aimed to determine the role of dfnb2 locus and frequency of myo7a gene mutations in a population from west of iran. methods: thirty families investigated in shahrekord university of medical sciences in 2014, genetic linkage analys...

membrane/ protein trafficking in the secretory/ biosynthetic and endocytic pathways is mediated by vesicles. vesicle trafficking in eukaryotes is regulated by a class of small monomeric gtpases the rab protein family. rab proteins represent the largest branch of the ras superfamily gtpases, and have been concerned in a variety of intracellular vesicle trafficking and different intracellular sig...

Protein evolution is an important field of research in bioinformatics and catalyzes the requirement of finding alignment tools that can be used to reliably and accurately model the evolution of a protein family. TM-Align (Zhang and Skolnick, 2005) is considered to be the ideal tool for such a task, in terms of both speed and accuracy. Therefore in this study, TM-Align has been used as a point o...

Statistical decision theory provides a principled way to estimate amino acid frequencies in conserved positions of a protein family. The goal is to minimize the risk function, or the expected squared-error distance between the estimates and the true population frequencies. The minimum-risk estimates are obtained by adding an optimal number of pseudocounts to the observed data. Two formulas are ...

The rapidly accumulating genome sequence data allow researchers to address fundamental biological questions that were not even asked just a few years ago. A major problem in genomics is the widening gap between the rapid progress in genome sequencing and the comparatively slow progress in the functional characterization of sequenced genomes. Here we discuss two key questions of genome biology: ...