نتایج جستجو برای: ppi networks
تعداد نتایج: 432422 فیلتر نتایج به سال:
Unlike eukaryotes, which often recruit duplicated genes into existing protein-protein interaction (PPI) networks, the low levels of gene duplication coupled with the high probability of lateral transfer of novel genes alters the manner in which PPI networks can evolve in bacteria. By inferring the PPIs present in the ancestor to contemporary Gammaproteobacteria, we were able to trace the change...
MOTIVATION Large amounts of biological network data exist for many species. Analogous to sequence comparison, network comparison aims to provide biological insight. Graphlet-based methods are proving to be useful in this respect. Recently some doubt has arisen concerning the applicability of graphlet-based measures to low edge density networks-in particular that the methods are 'unstable'-and f...
Networks are an invaluable framework for modeling biological systems. Analyzing protein-protein interaction (PPI) networks can provide insight into underlying cellular processes. It is expected that comparison and alignment of biological networks will have a similar impact on our understanding of evolution, biological function, and disease as did sequence comparison and alignment. Here, we intr...
Experimental protein-protein interaction (PPI) networks are increasingly being exploited in diverse ways for biological discovery. Accordingly, it is vital to discern their underlying natures by identifying and classifying the various types of deterministic (specific) and probabilistic (nonspecific) interactions detected. To this end, we have analyzed PPI networks determined using a range of hi...
Understanding complex networks of protein-protein interactions (PPIs) is one of the foremost challenges of the post-genomic era. Due to the recent advances in experimental bio-technology, including yeast-2-hybrid (Y2H), tandem affinity purification (TAP) and other high-throughput methods for protein-protein interaction (PPI) detection, huge amounts of PPI network data are becoming available. Of...
In this work, we explore the ecosystem of commercial pay-per-install (PPI) and the role it plays in the proliferation of unwanted software. Commercial PPI enables companies to bundle their applications with more popular software in return for a fee, effectively commoditizing access to user devices. We develop an analysis pipeline to track the business relationships underpinning four of the larg...
Biological networks often show a scale-free power-law distribution. Furthermore, leathal genes tend to form functional hubs whereas non-leathal disease genes are located at the periphery. Uni-dimensional analyses, however, are flawed. Here we report two distinct scale-free networks; a protein-protein interaction (PPI) and a perturbationsensitivity (PSN) network. Hubs of both networks demonstrat...
Performing global alignment between protein-protein interaction (PPI) networks of different organisms is important to infer knowledge about conservation across species. Known methods that perform this task operate symmetrically, that is to say, they do not assign a distinct role to the input PPI networks. However, in most cases, the input networks are indeed distinguishable on the basis of how ...
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