Background: Human immunodeficiency virus (HIV-1) exclusively selects and utilizes tRNALys,3 as the primer for initiation of reverse transcription. Several elements within the TΨC stem loop of tRNALys,3 are postulated to be important for selection and use in reverse transcription. The posttranscriptional modification at nucleotide 58 could play a role during plus-strand synthesis to stop reverse...