نتایج جستجو برای: folding

تعداد نتایج: 28731  

Journal: :The Journal of chemical physics 2006
Seung-Yeon Kim Weontae Lee Julian Lee

We perform a systematic study of the effects of sequence-independent backbone interactions and sequence-dependent side-chain interactions on protein folding using fragment assembly and physical energy function. Structures for ten proteins belonging to various structural classes are predicted only with Lennard-Jones interaction between backbone atoms. We find nativelike structures for beta prote...

Journal: :Protein science : a publication of the Protein Society 1999
H Gu N Doshi D E Kim K T Simons J V Santiago S Nauli D Baker

We use both combinatorial and site-directed mutagenesis to explore the consequences of surface hydrophobic substitutions for the folding of two small single domain proteins, the src SH3 domain, and the IgG binding domain of Peptostreptococcal protein L. We find that in almost every case, destabilizing surface hydrophobic substitutions have much larger effects on the rate of unfolding than on th...

Journal: :Physical review letters 2002
Jorge Chahine Hugh Nymeyer Vitor B P Leite Nicholas D Socci José Nelson Onuchic

Experiments with fast folding proteins are beginning to address the relationship between collapse and folding. We investigate how different scenarios for folding can arise depending on whether the folding and collapse transitions are concurrent or whether a nonspecific collapse precedes folding. Many earlier studies have focused on the limit in which collapse is fast compared to the folding tim...

Journal: :Chemistry & Biology 2000

Journal: :International Mathematics Research Notices 2010

Journal: :Science 2010

Journal: :Journal of Cell Biology 2006

Journal: :Physics 2011

Journal: :Nature Reviews Drug Discovery 2002

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