Since 1990, bioinformaticians have been exploring applications of the Chaos Game Representation (CGR) for visualisation, statistical characterisation and comparison of DNA sequences. We focus on the development of a new computational algorithm and description of new software tool that enables CGR visualisation of frequencies of K-mers (oligomers) in a flexible way such that it is possible to vi...

UNLABELLED MEDUSA is a tool for automatic selection and visual assessment of PCR primer pairs, developed to assist large scale gene expression analysis projects. The system allows specification of constraints of the location and distances between the primers in a pair. For instance, primers in coding, non-coding, exon/intron-spanning regions might be selected. Medusa applies these constraints a...

Microbiologists are routinely engaged isolation, identification and comparison of isolated bacteria for their novelty. 16S rRNA sequences of Bacillus pumilus were retrieved from NCBI repository and generated QR codes for sequences (FASTA format and full Gene Bank information). 16SrRNA were used to generate quick response (QR) codes of Bacillus pumilus isolated from Lonar Crator Lake (19° 58' N;...

Gravity formulated as a classical gauge theory is based on the Mach principle in terms of curvature scalar R by A. Einstein. The original idea Einstein limits gravity to act spacetime. However, there exist other possible fields such torsion and non-metricity. aim this paper make compatible comparison between three paradigms: via Einstein–Hilbert action, Teleparallel (TEGR) Coincidence (CGR). In...

The solution of Einstein’s field equations in Cosmological General Relativity (CGR), where the Galaxy is at the center of a finite yet bounded spherically symmetrical isotropic gravitational field, is identical with the unbounded solution. This leads to the conclusion that the Universe may be viewed as a finite expanding white hole. The fact that CGR has been successful in describing the distan...

In a field experiment, growth parameters of soybean cultivars in different weeding regimes was investigated. The trial was split plot in a randomized complete block design. The four cultivars and two lines of soybean (Glycine max L.) including: Sahar, Hill, Sari, Telar, 032 and 033 in main plot and weeding regime consist of no weeding (control), one weeding (35 days after planting) and two weed...

Information on subcellular localization of proteins plays a vitally important role in molecular cell biology, proteomics and drug discovery. In this field, finding the most suitable representation for protein sample is one of the most crucial procedures. Inspired by the modes of pseudo amino acid composition (PAA), cellular automaton image (CAI) for protein and the chaos game representation (CG...

Macromolecular SymposiaVolume 401, Issue 1 2270002 MastheadFree Access Macromol. Symp. 401 First published: 18 February 2022 https://doi.org/10.1002/masy.202270002AboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text full-text accessPlease review our Terms and Conditions of Use check box below share version article.I have read accept...

Small-angle scattering (SAS) technique is applied to study the nano and microstructural properties of spatial patterns generated from chaos game representation (CGR). Using a simplified version of Debye formula, we calculate and analyze in momentum space, the monodisperse scattering structure factor from a system of randomly oriented and non-interacting 2D Sierpinski gaskets (SG). We show that ...

Computer graphics (CGr) lies in the fundaments of computer aided engineering (CAE). As a result from the fast development in both CGr and CAE, more and more computer aided systems (CA-systems) have been ported on low-end and personal computers. Despite the continuous drop in the CA-system prices, this type of software is still very expensive compared to typical office applications. This paper d...