Nucleotide analogue interference mapping of DNA (dNAIM) is here introduced as a new nonenzymatic interference-based approach that enables high-throughput identification of essential nucleobase functional groups in DNA aptamers and in the catalytic core of deoxyribozymes. Nucleobase-modified ribonucleotides are statistically incorporated into DNA by solid-phase synthesis, employing the 2'-OH gro...

Group II introns are ribozymes with a complex tertiary architecture that is of great interest as a model for RNA folding. Domain 5 (D5) is a highly conserved region of the intron that is considered one of the most critical structures in the catalytic core. Despite its central importance, the means by which D5 interacts with other core elements is unclear. To obtain a map of potential interactio...

We previously conducted an in vitro selection experiment for RNA-cleaving deoxyribozymes, using a combinatorial DNA library containing 80 random nucleotides. Ultimately, 110 different sequence classes were isolated, but the vast majority contained a short14-15 nt catalytic DNA motif commonly known as 8-17. Herein, we report extensive truncation experiments conducted on multiple sequence classes...

Transcription from the commonly used GTP- initiating T7 class III promoter phi6.5 frequently produces heterogeneous RNA at both 3' and 5' ends. We demonstrate here that RNA transcripts from the T7 class II promoter phi2.5 have superior 5' homogeneity over those from the phi6.5 promoter, with comparable total RNA yields. The overall homogeneity of RNA transcripts is improved to different degrees...

The glmS ribozyme is a self-cleaving RNA catalyst that resides in the 5'-untranslated region of glmS mRNA in certain bacteria. The ribozyme is specifically activated by glucosamine-6-phosphate (GlcN6P), the metabolic product of the GlmS protein, and is thus proposed to provide a feedback mechanism of riboswitch regulation. Both phylogenetic and biochemical analyses of the glmS ribozyme have est...

simultaneous thermal analysis (sta) method has been applied to study decomposition reactions of ap under a flowing nitrogen atmosphere and static air. results obtained indicate that a phase transformation occurs prior to the decomposition reaction. decomposition takes place exothermally in two stages, first stage of decomposition could be suppressed by the controlled heating programme. addition...

a series of x(co, mn)/tio2 catalysts (x=2–12wt.%) containing 25%co and 75%mn were prepared by the co-impregnation method. all prepared catalysts have been tested in fischer-tropsch synthesis for production of c2-c4 olefins. it was found that the catalyst containing 8wt.%(co,mn)/tio2 is an optimal catalyst for production of c2-c4 olefins. the effect of operation conditions such as the h2/co mola...

waste low density polyethylenes (ldpe) represent a source of energy and valuablechemicals, were pyrolysed catalytically in a batch reactor under atmospheric pressure. calciumcarbide was used as a catalyst to explore its effect on pyrolysis product distribution. the effect oftemperature, amount of catalyst and time on the yields of the pyrolysed products wasinvestigated. the effect of catalyst o...

with its well-known biological toxicity, the excessive concentrations of sulfide in tannery wastewaters may upset the biological treatment processes, thus leading to a substantial decrease in the efficiency of treatment plants. the presence of sulfide in wastewaters may dramatically interfere with microbial activities and consequently disturb the function of the system as a whole. in this study...

the most accurate method for calculating the aeroheating is numerical solution method. using finite volume method to solve the navier-stokes equations in time is very time consuming. so by using the finite difference algorithm, transfer equations to curvature coordinate by the mapping function, and combination of the viscous shock layer and similarity of boundary layer, the ctca code was develo...