نتایج جستجو برای: casp8

تعداد نتایج: 645  

Journal: :Proteins 2009
John G Archie Martin Paluszewski Kevin Karplus

Our group tested three quality assessment functions in CASP8: a function which used only distance constraints derived from alignments (SAM-T08-MQAO), a function which added other single-model terms to the distance constraints (SAM-T08-MQAU), and a function which used both single-model and consensus terms (SAM-T08-MQAC). We analyzed the functions both for ranking models for a single target and f...

Journal: :Proteins: Structure, Function, and Bioinformatics 2009

2016
Tyler F. Hayes Nathan Benaich Stephen J. Goldie Kalle Sipilä Ashley Ames-Draycott Wenjun Cai Guangliang Yin Fiona M. Watt

Oral squamous cell carcinoma (OSCC) is genetically highly heterogeneous, which contributes to the challenges of treatment. To create an in vitro model that accurately reflects this heterogeneity, we generated a panel of HPV-negative OSCC cell lines. By whole exome sequencing of the lines and matched patient blood samples, we demonstrate that the mutational spectrum of the lines is representativ...

Journal: :Cancer Epidemiology Biomarkers & Prevention 2011

2015
Simon N. Stacey Hannes Helgason Sigurjon A. Gudjonsson Gudmar Thorleifsson Florian Zink Asgeir Sigurdsson Birte Kehr Julius Gudmundsson Patrick Sulem Bardur Sigurgeirsson Kristrun R. Benediktsdottir Kristin Thorisdottir Rafn Ragnarsson Victoria Fuentelsaz Cristina Corredera Yolanda Gilaberte Matilde Grasa Dolores Planelles Onofre Sanmartin Peter Rudnai Eugene Gurzau Kvetoslava Koppova Bjørn A. Nexø Anne Tjønneland Kim Overvad Jon G. Jonasson Laufey Tryggvadottir Hrefna Johannsdottir Anna M. Kristinsdottir Hreinn Stefansson Gisli Masson Olafur T. Magnusson Bjarni V. Halldorsson Augustine Kong Thorunn Rafnar Unnur Thorsteinsdottir Ulla Vogel Rajiv Kumar Eduardo Nagore José I. Mayordomo Daniel F. Gudbjartsson Jon H. Olafsson Kari Stefansson

In an ongoing screen for DNA sequence variants that confer risk of cutaneous basal cell carcinoma (BCC), we conduct a genome-wide association study (GWAS) of 24,988,228 SNPs and small indels detected through whole-genome sequencing of 2,636 Icelanders and imputed into 4,572 BCC patients and 266,358 controls. Here we show the discovery of four new BCC susceptibility loci: 2p24 MYCN (rs57244888[C...

Journal: :Folia histochemica et cytobiologica 2016
Anna Kozlowska Przemyslaw Kwiatkowski Agnieszka Oponowicz Mariusz Majewski Zbigniew Kmiec Janusz Godlewski

INTRODUCTION The previously performed studies showed that the presence of colorectal cancer (CRC) tumor is associated with the atrophy of myenteric plexuses in the vicinity of cancer invasion; however, the possible mechanisms of this phenomenon are not known. The aim of the present study was to determine whether the atrophic changes of the enteric nervous system (ENS) within an intestine wall o...

Journal: :Proteins: Structure, Function, and Bioinformatics 2009

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