Although there are some real world applications where the use of variable length representation (VLR) in Evolutionary Algorithm is natural and suitable, an academic framework is lacking for such representations. In this work we propose a family of tunable fitness landscapes based on VLR of genotypes. The fitness landscapes we propose possess a tunable degree of both neutrality and epistasis; th...

A landscape perspective is generally recognized as essential for conservation biology. The main underlying reason is that species respond to features of the landscape at various spatial scales, for example habitat area, connectivity, and matrix habitats. However, there is also an “historical” component of a landscape perspective, which has not received similar attention. The underlying reasons ...

Properties of biological fitness landscapes are of interest to a wide sector of the life sciences, from ecology to genetics to synthetic biology. For biomolecular fitness landscapes, the information we currently possess comes primarily from two sources: sparse samples obtained from directed evolution experiments; and more fine-grained but less authentic information from 'in silico' models (such...

Increasing human land use for agriculture and housing leads to the loss of natural habitat and to widespread declines in wild bees. Bee foraging dynamics and fitness depend on the availability of resources in the surrounding landscape, but how precisely landscape related resource differences affect bee foraging patterns remains unclear. To investigate how landscape and its interaction with seas...

Landscapes exhibiting multiple secondary structures arise in natural RNA molecules that modulate gene expression, protein synthesis, and viral infection, but it is unclear whether such rich landscapes are special features of biological sequences or whether they can arise without explicit selection. We report herein that high-throughput chemical experiments can isolate an RNA’s multiple alternat...

Halyomorpha halys is an invasive species from Asia causing major economic losses in agricultural production in the mid-Atlantic region of the United States. Unlike other crop pests, H. halys is also well-known for nuisance problems in urban, suburban, and rural areas, as massive numbers of adults often invade human-made structures to overwinter inside protected environments. Research efforts ha...

We introduce a broadened framework to study aspects of coevolution based on the NK class of statistical models of rugged fitness landscapes. In these models the fitness contribution of each of N genes in a genotype depends epistatically on K other genes. Increasing epistatic interactions increases the rugged multipeaked character of the fitness landscape. Coevolution is thought of, at the lowes...