Genes involved in disease that are not common are often difficult to identify; a method that pinpoints them from a small number of unrelated patients will be of great help. In order to establish such a method that detects recessive genes identical-by-descent, we modified homozygosity mapping (HM) so that it is constructed on the basis of homozygosity haplotype (HM on HH) analysis. An analysis u...

We derive the exact one-step transition probabilities of the number of lineages that are ancestral to a random sample from the current generation of a bi-parental population that is evolving under the discrete Wright-Fisher model with n diploid individuals. Our model allows for a per-generation recombination probability of r . When r = 1, our model is equivalent to Chang's (Adv Appl Probab 31:1...

One of the limiting factors for high resolution magnetic resonance coronary angiography (MRCA) is the motion of the heart during breathing. Current approaches use mainly motion correction in one dimension. We aimed to determine the relation between diaphragmatic motion and cardiac motion as well as the potential influence from external restraints reducing thoracical anterior posterior (AP) moti...

BACKGROUND The classification of HIV-1 strains in subtypes and Circulating Recombinant Forms (CRFs) has helped in tracking the course of the HIV pandemic. In Senegal, which is located at the tip of West Africa, CRF02_AG predominates in the general population and Female Sex Workers (FSWs). In contrast, 40% of Men having Sex with Men (MSM) in Senegal are infected with subtype C. In this study we ...

Sub-single-cycle pulses in the mid-infrared (MIR) region were generated through a laser-induced filament. The fundamental (ω1) and second harmonic (ω2) output of a 30-fs Ti:sapphire amplifier were focused into nitrogen gas and produce phase-stable broadband MIR pulses (ω0) by using a four-wave mixing process (ω1 + ω1 − ω2 → ω0) through filamentation. The spectrum spread from 400 cm−1 to 5500 cm...

The accuracy of phylogenetic inference can be significantly improved by the addition of more taxa and by increasing the spatial coverage of sampling. In previous studies, the brown mussel Perna perna showed a sister-lineage relationship between eastern and western individuals contiguously distributed along the South African coastline. We used mitochondrial (COI) and nuclear (ITS) sequence data ...

Abstract. We present an elementary model of random size varying population given by a stationary continuous state branching process. For this model we compute the joint distribution of: the time to the most recent common ancestor, the size of the current population and the size of the population just before the most recent common ancestor (MRCA). In particular we show a natural mild bottleneck ...

1 Zhejiang Provincial Key Laboratory of Applied Enzymology, Yangtze Delta Region Institute of Tsinghua University, Jiaxing 314006, P. R. China. 2 College of Biological and Environmental Sciences, Zhejiang Wanli University, Ningbo 315100, P. R. China. 3 Molecular Inflammation Research Center for Aging Intervention (MRCA), College of Pharmacy, Pusan National University, Busan 609-735, Korea. 4 De...

In a population of constant size, whose family sizes evolve as Wright-Fisher diffusions, all individuals alive at time t have a most recent common ancestor (MRCA) who lived at time A(t), say. The process (A(t)) has piecewise constant paths. At each jump time En, a new MRCA takes over, who lived at time Bn := A(En). We construct the random sequence (Bn, En) in terms of a look-down process and in...

It has recently been suggested that HCV genotype 2 (HCV-2) was more recently introduced to Cameroon (Middle Africa) than West African countries. In order to explore the relationships among HCV-2 strains from Cameroon and West Africa, and to estimate the epidemic history of each lineage, a recently-developed Bayesian evolutionary analysis approach was used. The estimated date of the most recent ...