نتایج جستجو برای: biosynthetic gene clusters

تعداد نتایج: 1274616  

2016
Alolika Chakrabortti Jinming Li Zhao-Xun Liang

Ochratoxin A (OTA) is a common mycotoxin that contaminates food and agricultural products. Sequencing of the complete genome of Aspergillus westerdijkiae, a major producer of OTA, reveals more than 50 biosynthetic gene clusters, including a putative OTA biosynthetic gene cluster that encodes a dozen of enzymes, transporters, and regulatory proteins.

2015
Zachary Charlop-Powers Jeremy G Owen Boojala Vijay B Reddy Melinda A Ternei Denise O Guimarães Ulysses A de Frias Monica T Pupo Prudy Seepe Zhiyang Feng Sean F Brady

Recent bacterial (meta)genome sequencing efforts suggest the existence of an enormous untapped reservoir of natural-product-encoding biosynthetic gene clusters in the environment. Here we use the pyro-sequencing of PCR amplicons derived from both nonribosomal peptide adenylation domains and polyketide ketosynthase domains to compare biosynthetic diversity in soil microbiomes from around the glo...

2015
Hisayuki Komaki Natsuko Ichikawa Akira Hosoyama Nobuyuki Fujita Yasuhiro Igarashi

Here, we report the draft genome sequence of Streptomyces sp. TP-A0890, a producer of FR-900452 and A-74863a. The genome was found to contain at least eight polyketide synthase and nonribosomal peptide synthetase gene clusters. A prediction of gene functions based on the sequence similarity allowed us to assign the biosynthetic gene clusters for FR-900452 and A-74863a.

2013
Myco Umemura Hideaki Koike Nozomi Nagano Tomoko Ishii Jin Kawano Noriko Yamane Ikuko Kozone Katsuhisa Horimoto Kazuo Shin-ya Kiyoshi Asai Jiujiang Yu Joan W. Bennett Masayuki Machida

Many bioactive natural products are produced as "secondary metabolites" by plants, bacteria, and fungi. During the middle of the 20th century, several secondary metabolites from fungi revolutionized the pharmaceutical industry, for example, penicillin, lovastatin, and cyclosporine. They are generally biosynthesized by enzymes encoded by clusters of coordinately regulated genes, and several moti...

2018
Rebecca Joynt Ryan F. Seipke

Streptomyces species and other Actinobacteria are ubiquitous in diverse environments worldwide and are the source of, or inspiration for, the majority of antibiotics. The genomic era has enhanced biosynthetic understanding of these valuable chemical entities and has also provided a window into the diversity and distribution of natural product biosynthetic gene clusters. Antimycin is an inhibito...

Journal: :FEMS microbiology letters 2013
Ran Zhang Haiyang Xia Qingyu Xu Fujun Dang Zhongjun Qin

The model organism Streptomyces coelicolor A3(2) harbors a 356-kb linear plasmid, SCP1. We report here development of a recombinational cloning method for deleting large segment from one telomere of SCP1 followed by replacing with the telomere of pSLA2 and sequentially inserting with the overlapping cosmids in vivo. The procedure depends on homologous recombination coupled with cleavage at telo...

2017
Michalis Hadjithomas I-Min A. Chen Ken Chu Jinghua Huang Anna Ratner Krishna Palaniappan Evan Andersen Victor M. Markowitz Nikos Kyrpides Natalia Ivanova

Secondary metabolites produced by microbes have diverse biological functions, which makes them a great potential source of biotechnologically relevant compounds with antimicrobial, anti-cancer and other activities. The proteins needed to synthesize these natural products are often encoded by clusters of co-located genes called biosynthetic gene clusters (BCs). In order to advance the exploratio...

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