The Open Anatomy Browser (OABrowser) is an open source, web-based, zero-installation anatomy atlas viewer based on current web browser technologies and evolving anatomy atlas interoperability standards. OABrowser displays three-dimensional anatomical models, image cross-sections of labeled structures and source radiological imaging, and a text-based hierarchy of structures. The viewer includes ...

RATIONALE Hypoplasia with an intact posterior arch of the atlas and ossification of the posterior atlantoaxial membrane (PAAM) are individually rare. PATIENT CONCERNS The patient presented with a 6-month history of progressive weakness and paresthesia of his lower extremities. DIAGNOSES Cervical myelopathy resulting from atlas hypoplasia and ossification of the posterior atlantoaxial membra...

To investigate functional brain networks, many graph-theoretical studies have defined nodes in a graph using an anatomical atlas with about a hundred partitions. Although use of anatomical node definition is popular due to its convenience, functional inhomogeneity within each node may lead to bias or systematic errors in the graph analysis. The current study was aimed to show functional inhomog...

PURPOSE The aim of this study is to ascertain the subsequent radiobiological impact of using a consensus guideline target volume delineation atlas. MATERIALS AND METHODS Using a representative case and target volume delineation instructions derived from a proposed IMRT rectal cancer clinical trial, gross tumor volume (GTV) and clinical/planning target volumes (CTV/PTV) were contoured by 13 ph...

PURPOSE Radiotherapy planning requires accurate delineations of the tumor and of the critical structures. Atlas-based segmentation has been shown to be very efficient to automatically delineate brain critical structures. We therefore propose to construct an anatomical atlas of the head and neck region. METHODS AND MATERIALS Due to the high anatomical variability of this region, an atlas built...

Automated segmenting and labeling of individual brain anatomical regions, in MRI are challenging, due to the issue of individual structural variability. Although atlas-based segmentation has shown its potential for both tissue and structure segmentation, due to the inherent natural variability as well as disease-related changes in MR appearance, a single atlas image is often inappropriate to re...

Functional brain imaging and neurosurgery in subcortical areas often requires visualization of brain nuclei beyond the resolution of current magnetic resonance imaging (MRI) methods. We present techniques used to create: (1) a lower resolution 3D atlas, based on the Schaltenbrand and Wahren print atlas, which was integrated into a stereotactic neurosurgery planning and visualization platform (V...

In this research report, we present a general scheme for building entirely automatically a morphometric anatomical atlas from 3D medical images (CT-Scan, Magnetic Resonance Imagery). We detail each step of the method, including the non-rigid registration algorithm, 3D feature lines averaging, and statistical processes. We apply the method to obtain a quantitative atlas of crest lines of the sku...

We present a new standard atlas of the human brain based on magnetic resonance images. The atlas was generated using unbiased population registration from high-resolution images obtained by multichannel-coil acquisition at 3T in a group of 24 normal subjects. The final atlas comprises three anatomical channels (T(1)-weighted, early and late spin echo), three diffusion-related channels (fraction...

This recently completed atlas provides a new and excellent set of photomicrographs to aid both the novice and experienced researcher who is studying the detailed structures of the Sprague-Dawley rat brain in a variety of in vivo settings. The atlas provides detailed maps and coordinates for stereotaxic surgery which includes three perpendicular planes; transverse sections are at every 0.3 mm. T...