نتایج جستجو برای: admixture

تعداد نتایج: 5019  

Journal: :Journal of Biological Research - Bollettino della Società Italiana di Biologia Sperimentale 2012

Journal: :Proceedings. Biological sciences 2015
Ryan P Kovach Clint C Muhlfeld Matthew C Boyer Winsor H Lowe Fred W Allendorf Gordon Luikart

Hybridization between native and non-native species has serious biological consequences, but our understanding of how dispersal and selection interact to influence invasive hybridization is limited. Here, we document the spread of genetic introgression between a native (Oncorhynchus clarkii) and invasive (Oncorhynchus mykiss) trout, and identify the mechanisms influencing genetic admixture. In ...

Journal: :Genetics 2015
Alisa Sedghifar Yaniv Brandvain Peter Ralph Graham Coop

Recent genomic studies have highlighted the important role of admixture in shaping genome-wide patterns of diversity. Past admixture leaves a population genomic signature of linkage disequilibrium (LD), reflecting the mixing of parental chromosomes by segregation and recombination. These patterns of LD can be used to infer the timing of admixture, but the results of inference can depend strongl...

2014
Laurent A F Frantz Ole Madsen Hendrik-Jan Megens Martien A M Groenen Konrad Lohse

In many temperate regions, ice ages promoted range contractions into refugia resulting in divergence (and potentially speciation), while warmer periods led to range expansions and hybridization. However, the impact these climatic oscillations had in many parts of the tropics remains elusive. Here, we investigate this issue using genome sequences of three pig (Sus) species, two of which are foun...

2018
R B Onzima M R Upadhyay R Mukiibi E Kanis M A M Groenen R P M A Crooijmans

Uganda has a large population of goats, predominantly from indigenous breeds reared in diverse production systems, whose existence is threatened by crossbreeding with exotic Boer goats. Knowledge about the genetic characteristics and relationships among these Ugandan goat breeds and the potential admixture with Boer goats is still limited. Using a medium-density single nucleotide polymorphism (...

2005
Michal E. Douglas

T he efficacy of various types of pulmonary therapy is often questioned. This may stem from investigative methods. Evaluation of pulmonary gas exchange usually involves the determination of arterial oxygen tension (Pa02) and the calculation of the alveolar-to-arterial oxygen tension difference (P[Aa]O2), or pulmonary venous admixture, while pure oxygen is administered. Evaluation performed with...

2015
Shai Carmi James Xue Itsik Pe'er

Admixed populations are formed by the merging of two or more ancestral populations, and the ancestry of each locus in an admixed genome derives from either source. Consider a simple “pulse” admixture model, where populations A and B merged t generations ago without subsequent gene flow. We derive the distribution of the proportion of an admixed chromosome that has A (or B) ancestry, as a functi...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2010
Steven M Bray Jennifer G Mulle Anne F Dodd Ann E Pulver Stephen Wooding Stephen T Warren

The Ashkenazi Jewish (AJ) population has long been viewed as a genetic isolate, yet it is still unclear how population bottlenecks, admixture, or positive selection contribute to its genetic structure. Here we analyzed a large AJ cohort and found higher linkage disequilibrium (LD) and identity-by-descent relative to Europeans, as expected for an isolate. However, paradoxically we also found hig...

2010
Gary K. Chen Robert C. Millikan Esther M. John Christine B. Ambrosone Leslie Bernstein Wei Zheng Jennifer J. Hu Stephen J. Chanock Regina G. Ziegler Elisa V. Bandera Brian E. Henderson Christopher A. Haiman Daniel O. Stram

We consider the feasibility of reusing existing control data obtained in genetic association studies in order to reduce costs for new studies. We discuss controlling for the population differences between cases and controls that are implicit in studies utilizing external control data. We give theoretical calculations of the statistical power of a test due to Bourgain et al (Am J Human Genet 200...

Journal: :PLoS Genetics 2008
Sijia Wang Nicolas Ray Winston Rojas Maria V. Parra Gabriel Bedoya Carla Gallo Giovanni Poletti Guido Mazzotti Kim Hill Ana M. Hurtado Beatriz Camrena Humberto Nicolini William Klitz Ramiro Barrantes Julio A. Molina Nelson B. Freimer Maria Cátira Bortolini Francisco M. Salzano Maria L. Petzl-Erler Luiza T. Tsuneto José E. Dipierri Emma L. Alfaro Graciela Bailliet Nestor O. Bianchi Elena Llop Francisco Rothhammer Laurent Excoffier Andrés Ruiz-Linares

The large and diverse population of Latin America is potentially a powerful resource for elucidating the genetic basis of complex traits through admixture mapping. However, no genome-wide characterization of admixture across Latin America has yet been attempted. Here, we report an analysis of admixture in thirteen Mestizo populations (i.e. in regions of mainly European and Native settlement) fr...

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