GenoMiner is a software tool that searches for regions of similarity between user-submitted genome or transcript sequences and user-specified whole genome assemblies. The program then identifies conserved sequence tags (CSTs) in these homologous regions and provides a prediction of their coding or non-coding nature. The analysis is carried out through three steps: (1) definition of sequence reg...

BeetleBase (http://www.beetlebase.org) has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum. The database contains genomic sequence scaffolds mapped to 10 linkage groups (genome assembly release Tcas_3.0), genetic linkage maps, the official gene set, Reference Sequences from NCBI (RefSeq), predicted gene models, ESTs and whole-genome ti...

SUMMARY Fragment recruitment, a process of aligning sequencing reads to reference genomes, is a crucial step in metagenomic data analysis. The available sequence alignment programs are either slow or insufficient for recruiting metagenomic reads. We implemented an efficient algorithm, FR-HIT, for fragment recruitment. We applied FR-HIT and several other tools including BLASTN, MegaBLAST, BLAT, ...

Purpose The study aims to investigate cultural aspects in supply chains, analysing the effect that local customs may have quality of buyer–supplier relationships. Building on premisses social exchange theory (SET), it concentrates impacts suppliers’ use practices and informal networks buyers’ attitudes perceptions. issues addressed empirical evidence provided represent initial, yet important st...

There is a pressing need to align the growing set of expressed sequence tags (ESTs) with the newly sequenced human genome. However, the problem is complicated by the exon/intron structure of eukaryotic genes misread nucleotides in ESTs, and the millions of repetitive sequences in genomic sequences. To solve this problem, algorithms that use dynamic programming have been proposed. In reality, ho...

We investigated the mechanisms of vowel epenthesis in consonant clusters using the WAVE system (NDI Corp.). Tongue tip movements were measured during the articulation of native and non-native consonant clusters in English. The subjects were three English speakers (2 males and 1 female). The speech samples were 3 words: blat, bnat, btat. In these words, consonant cluster /bl/ is native in Englis...