نتایج جستجو برای: viral genotypes

تعداد نتایج: 204021  

2010
David J. Rooks Darren L. Smith James E. McDonald Martin J. Woodward Alan J. McCarthy Heather E. Allison

Viruses, the most abundant biological entities on the planet, are capable of infecting organisms from all three branches of life, although the majority infect bacteria where the greatest degree of cellular diversity lies. However, the characterization and assessment of viral diversity in natural environments is only beginning to become a possibility. Through the development of a novel technique...

2015
Tadeusz Wojciech Łapiński Magdalena Rogalska-Płonska Anatol Panasiuk Oksana Kowalczuk Jacek Nikliński Robert Flisiak

AIM OF THE STUDY To determine distribution of rs12979860 genotypes, their correlations with viral load as well as inflammatory activity and stage of liver fibrosis in patients infected with HCV genotype 1. MATERIAL AND METHODS The study included 132 patients infected with HCV genotype 1b. Serum viral loads were obtained with the PCR method. Rs12979860 polymorphisms were determined by sequenci...

2016
Emma Thomson Camilla L C Ip Anjna Badhan Mette T Christiansen Walt Adamson M Azim Ansari David Bibby Judith Breuer Anthony Brown Rory Bowden Josie Bryant David Bonsall Ana Da Silva Filipe Chris Hinds Emma Hudson Paul Klenerman Kieren Lythgow Jean L Mbisa John McLauchlan Richard Myers Paolo Piazza Sunando Roy Amy Trebes Vattipally B Sreenu Jeroen Witteveldt Eleanor Barnes Peter Simmonds

Affordable next-generation sequencing (NGS) technologies for hepatitis C virus (HCV) may potentially identify both viral genotype and resistance genetic motifs in the era of directly acting antiviral (DAA) therapies. This study compared the ability of high-throughput NGS methods to generate full-length, deep, HCV sequence data sets and evaluated their utility for diagnostics and clinical assess...

Journal: :Virology 2000
G Sommer F van Bömmel H Will

Hepatitis B virus-infected patients frequently have viral particles with DNA derived from differently spliced RNA. Which factors influence the synthesis of these splice variants is unclear. We analysed the type of splice variants produced from different genotypes and determined whether they are secreted as efficiently as wild-type virus. We demonstrate production of a single splice variant from...

Journal: :Diseases of aquatic organisms 2010
T Ito N J Olesen H F Skall M Sano J Kurita K Nakajima T Iida

The viral haemorrhagic septicaemia virus (VHSV) comprises 4 major genotypes and a number of subtypes with, in most cases, distinct geographical distribution. A quick and simple detection method that can discriminate the different genotypes is desirable for a quick and more efficient prevention of the spread of genotypes to new geographical areas. A monoclonal antibody (MAb) against VHSV genotyp...

Journal: :Journal of virology 2005
Chloe L Thio Timothy Mosbruger Jacquie Astemborski Spencer Greer Gregory D Kirk Stephen J O'Brien David L Thomas

Mannose binding lectin (MBL) is a central component of the innate immune response and thus may be important for determining hepatitis B virus (HBV) persistence. Since single-nucleotide polymorphisms (SNPs) in the gene encoding MBL (mbl2) alter the level of functional MBL, we hypothesized that mbl2 genotypes are a determinant of HBV persistence or recovery from viral infection. We tested this hy...

2014
Vijay R. Chavan Deepali Chaudhari Swati Ahir Zakiya Ansari Preeti Mehta Jayanti Mania-Pramanik

BACKGROUND NK cells have anti-HIV activity mediated through killer cell immunoglobulin-like receptors (KIRs). The current prospective cohort study evaluated whether variation in KIR genes is associated with HIV infection in discordant couples (DCs), where one spouse remains seronegative (HSN) despite repeated exposure to the HIV. METHODS KIR was genotyped using PCR SSP. Viral load and CD4 cou...

2013
Chi-Jung Huang Chih-Feng Wu Chia-Ying Lan Feng-Yu Sung Chih-Lin Lin Chun-Jen Liu Hsin-Fu Liu Ming-Whei Yu

OBJECTIVE The hepatitis B virus (HBV)-polymerase region overlaps pre-S/S genes with high epitope density and plays an essential role in viral replication. We investigated whether genetic variation in the polymerase region determined long-term dynamics of viral load and the risk of hepatitis B progression in a population-based cohort study. METHODS We sequenced the HBV-polymerase region using ...

Journal: :PLoS Medicine 2009
Jan Felix Drexler Bernd Kupfer Nadine Petersen Rejane Maria Tommasini Grotto Silvia Maria Corvino Rodrigues Klaus Grywna Marcus Panning Augustina Annan Giovanni Faria Silva Jill Douglas Evelyn S. C Koay Heidi Smuts Eduardo M Netto Peter Simmonds Maria Inês de Moura Campos Pardini W. Kurt Roth Christian Drosten

BACKGROUND Detection and quantification of hepatitis C virus (HCV) RNA is integral to diagnostic and therapeutic regimens. All molecular assays target the viral 5'-noncoding region (5'-NCR), and all show genotype-dependent variation of sensitivities and viral load results. Non-western HCV genotypes have been under-represented in evaluation studies. An alternative diagnostic target region within...

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