نتایج جستجو برای: using cluster analysis upgma

تعداد نتایج: 5429423  

Journal: :علوم باغبانی ایران 0
ذبیح اله زمانی عبداله خدیوی خوب ناصر بوذری حمیدرضا جعفری

rapd markers through an application of 23 decamer primers were employed for genetic diversity analysis of some sweet cherry cultivars. bands with good resolution and high repeatability were selected for evaluations. the 23 primers produced 188 bands, among which, 153 were polymorphic. cluster analysis of the cultivars was performed based on the presence (1) and absence (0) of the bands, using j...

Journal: :پژوهش های تولید گیاهی 0
امیر عزیزیان دانشجوی سابق دانشکده کشاورزی دانشگاه تهران جواد مظفری رئیس بخش تحقیقات ژنتیک و بانک ژن گیاهی ملی ایران بهمن یزدی صمدی استاد گروه زراعت و اصلاح نباتات پردیس کشاورزی و منابع طبیعی دانشگاه تهران- کرج علی اکبر شاه نجات بوشهری استاد گروه زراعت و اصلاح نباتات پردیس کشاورزی و منابع طبیعی دانشگاه تهران- کرج محمد رضا نقوی استاد گروه زراعت و اصلاح نباتات پردیس کشاورزی و منابع طبیعی دانشگاه تهران- کرج

genetic diversity of 22 morphotypes of diploid wheat (t. urartu) was investigated using morphological traits and rapd markers. morphological characterizations were carried out based on 17 traits and statistical parameters of dispersion and diversity of agronomic traits were calculated. statistical analysis showed significant differences for all characters among morphotypes. dendrograms were gen...

Journal: :journal of sciences islamic republic of iran 0

a phenetic analysis is presented using sahn clustering (upgma, simple matching coefficient). the resulting phenetic analysis is compared with the classification of oxytropis as suggested by bunge [2] and vassilczenko [ll]. the results partly correspond with bungean classification and suggest that there are basically four sections (mesogaea, oxytropis, janthina, eumorphu) which can be grouped un...

2010
Tarik S. K. M. Rabie

Random Amplified Polymorphic DNA (RAPD) markers was used to analyze the genetic structure of five Indigenous Egyptian’s chicken populations including Fayoumi, Dokki-4, Golden Montazah, Silver Montazah, and ElSalam, based on the taxa generated by the analysis of ten RAPD markers. The population genetic distances were estimated by using two cluster algorithms (UPGMA & NJ neighbor-joining) accompa...

Journal: :iranian journal of biotechnology 2006
mahmmood malaki mohammad reza naghavi hoshang alizadeh payam potki mehrbanoo kazemi

little information is available regarding genetic variation in wild wheat relatives from iran. in this study, genetic diversity of 36 populations of wild einkorn wheat, triticum boeoticum, was studied using amplified fragment length polymorphism (aflp) primer combinations. seventeen aflp primer combinations led to amplify 979 scorable fragments ranging from 50 to 500 bp and of these, 429 (44%) ...

Journal: :Bioinformatics 2005
Katechan Jampachaisri Lea Valinsky James Borneman S. James Press

MOTIVATION Oligonucleotide fingerprinting of ribosomal RNA genes (OFRG) is a procedure that sorts rRNA gene (rDNA) clones into taxonomic groups through a series of hybridization experiments. The hybridization signals are classified into three discrete values 0, 1 and N, where 0 and 1, respectively, specify negative and positive hybridization events and N designates an uncertain assignment. This...

Journal: :Advances in Applied Mathematics 2013

2006
Yehang Zhu Guanzhong Dai Benjamin C. M. Fung Dejun Mu

This paper presents a new document clustering method based on frequent co-occurring words. We first employ the Singular Value Decomposition, and then group the words into clusters called word representatives as substitution of the corresponding words in the original documents. Next, we extract the frequent word representative sets by Apriori. Subsequently, each document is designated to a basic...

Journal: :Genetics and molecular research : GMR 2014
N K Korir W Diao R Tao X Li E Kayesh A Li W Zhen S Wang

The genetic diversity and relationship of 42 tomato varieties sourced from different geographic regions was examined with EST-SSR markers. The genetic diversity was between 0.18 and 0.77, with a mean of 0.49; the polymorphic information content ranged from 0.17 to 0.74, with a mean of 0.45. This indicates a fairly high degree of diversity among these tomato varieties. Based on the cluster analy...

حسنی تسیه, سیده فاطمه, سمیع زاده لاهیجی, حبیب الله , شعاعی دیلمی, مرداویج ,

In present study IRAP and REMAP markers were used to assess genetic diversity levels in 45 genotypes of different types of tobacco germplasm, including burley, flue-cured and oriental tobacco that out of 20 composition primers, 5 IRAP primersand 9 REMAP primers produced scorable and polymorphic banding patterns. Totally from 188 amplified loci, 153 loci were polymorph. RTR-10 and RTR-1 with 22 ...

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