نتایج جستجو برای: universal rice primer

تعداد نتایج: 207599  

1999
W. C. Rice

W.C. RICE. 1999. A PCR-based method was developed for the rapid detection of vip3A gene encoding a novel Bacillus thuringiensis vegetative insecticidal protein with a wide spectrum of activities against lepidopteran insects. Specific primer combinations (three primers for the normal strand and two primers for the complementary strand) were capable of generating diagnostic fragments that success...

2007
NATALIA V. IVANOVA ROBERT H. HANNER PAUL D. N. HEBERT

Reliable recovery of the 5′ region of the cytochrome c oxidase 1 (COI) gene is critical for the ongoing effort to gather DNA barcodes for all fish species. In this study, we develop and test primer cocktails with a view towards increasing the efficiency of barcode recovery. Specifically, we evaluate the success of polymerase chain reaction amplification and the quality of resultant sequences us...

Journal: :Persoonia 2015
J B Stielow C A Lévesque K A Seifert W Meyer L Iriny D Smits R Renfurm G J M Verkley M Groenewald D Chaduli A Lomascolo S Welti L Lesage-Meessen A Favel A M S Al-Hatmi U Damm N Yilmaz J Houbraken L Lombard W Quaedvlieg M Binder L A I Vaas D Vu A Yurkov D Begerow O Roehl M Guerreiro A Fonseca K Samerpitak A D van Diepeningen S Dolatabadi L F Moreno S Casaregola S Mallet N Jacques L Roscini E Egidi C Bizet D Garcia-Hermoso M P Martín S Deng J Z Groenewald T Boekhout Z W de Beer I Barnes T A Duong M J Wingfield G S de Hoog P W Crous C T Lewis S Hambleton T A A Moussa H S Al-Zahrani O A Almaghrabi G Louis-Seize R Assabgui W McCormick G Omer K Dukik G Cardinali U Eberhardt M de Vries V Robert

The aim of this study was to assess potential candidate gene regions and corresponding universal primer pairs as secondary DNA barcodes for the fungal kingdom, additional to ITS rDNA as primary barcode. Amplification efficiencies of 14 (partially) universal primer pairs targeting eight genetic markers were tested across > 1 500 species (1 931 strains or specimens) and the outcomes of almost twe...

2013
Nils Johan Fredriksson Malte Hermansson Britt-Marie Wilén

Assessments of bacterial community diversity and dynamics are fundamental for the understanding of microbial ecology as well as biotechnological applications. We show that the choice of PCR primers has great impact on the results of analyses of diversity and dynamics using gene libraries and DNA fingerprinting. Two universal primer pairs targeting the 16S rRNA gene, 27F&1492R and 63F&M1387R, we...

2017
Dina M Al-Mailem Mayada K Kansour Samir S Radwan

Prokaryotic communities in pristine and oil-contaminated desert soil, seawater, and hypersaline coastal soil were analyzed using culture-dependent and culture-independent approaches. The former technique was the dilution-plating method. For the latter, total genomic DNA was extracted and the 16S rRNA genes were amplified using a universal bacterial primer pair and primer pairs specific for Acti...

2008
Julia P. Galkiewicz Christina A. Kellogg

9 PCR amplification of pure bacterial DNA is vital to the study of bacterial interactions 10 with corals. Commonly used bacterial-specific primers 8F and 27F paired with universal 11 primer 1492R amplify both eukaryotic and prokaryotic rDNA. An alternative primer set, 12 63F/1542R, is suggested to resolve this problem. 13

Journal: :Applied and environmental microbiology 2008
Julia P Galkiewicz Christina A Kellogg

PCR amplification of pure bacterial DNA is vital to the study of bacterial interactions with corals. Commonly used Bacteria-specific primers 8F and 27F paired with the universal primer 1492R amplify both eukaryotic and prokaryotic rRNA genes. An alternative primer set, 63F/1542R, is suggested to resolve this problem.

Journal: :Nucleic Acids Research 2005
A. Pemov H. Modi D. P. Chandler S. Bavykin

We have developed a highly sensitive method for DNA analysis on 3D gel element microarrays, a technique we call multiplex microarray-enhanced PCR (MME-PCR). Two amplification strategies are carried out simultaneously in the reaction chamber: on or within gel elements, and in bulk solution over the gel element array. MME-PCR is initiated by multiple complex primers containing gene-specific, forw...

Journal: :Computer applications in the biosciences : CABIOS 1996
V. Proutski Edward C. Holmes

The polymerase chain reaction (PCR) is one of the most rapidly expanding methods in molecular biology. Although the range of applications of PCR is very broad, the key points for successful performance remain the careful selection of optimal primers and the proper determination of the temperature conditions of the reaction. The program presented here, 'Primer Master', has been developed to assi...

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