نتایج جستجو برای: seq ssr

تعداد نتایج: 22807  

Journal: :Journal of clinical microbiology 2007
Yael Danin-Poleg Lyora A Cohen Hanan Gancz Yoav Y Broza Hanoh Goldshmidt Elinor Malul Lea Valinsky Larisa Lerner Meir Broza Yechezkel Kashi

Vibrio cholerae is the etiological agent of cholera. Its natural reservoir is the aquatic environment. To date, practical typing of V. cholerae is mainly serological and requires about 200 antisera. Simple sequence repeats (SSR), also termed VNTR (for variable number of tandem repeats), provide a source of high genomic polymorphism used in bacterial typing. Here we describe an SSR-based typing ...

2015
Shouvik Das Hari D. Upadhyaya Deepak Bajaj Alice Kujur Saurabh Badoni Laxmi Vinod Kumar Shailesh Tripathi C. L. Laxmipathi Gowda Shivali Sharma Sube Singh Akhilesh K. Tyagi Swarup K. Parida

A rapid high-resolution genome-wide strategy for molecular mapping of major QTL(s)/gene(s) regulating important agronomic traits is vital for in-depth dissection of complex quantitative traits and genetic enhancement in chickpea. The present study for the first time employed a NGS-based whole-genome QTL-seq strategy to identify one major genomic region harbouring a robust 100-seed weight QTL us...

2015
Huaiyong Luo Xiaojie Wang Gangming Zhan Guorong Wei Xinli Zhou Jing Zhao Lili Huang Zhensheng Kang David D Fang

The biotrophic parasitic fungus Puccinia striiformis f. sp. tritici (Pst) causes stripe rust, a devastating disease of wheat, endangering global food security. Because the Pst population is highly dynamic, it is difficult to develop wheat cultivars with durable and highly effective resistance. Simple sequence repeats (SSRs) are widely used as molecular markers in genetic studies to determine po...

2016
Shangguo Feng Renfeng He Jiangjie Lu Mengying Jiang Xiaoxia Shen Yan Jiang Zhi'an Wang Huizhong Wang

Chrysanthemum morifolium, is a well-known flowering plant worldwide, and has a high commercial, floricultural, and medicinal value. In this study, simple-sequence repeat (SSR) markers were generated from EST datasets and were applied to assess the genetic diversity among 32 cultivars. A total of 218 in silico SSR loci were identified from 7300 C. morifolium ESTs retrieved from GenBank. Of all S...

2009
Alejandro J. Moyano Andrea M. Smania

In Pseudomonas aeruginosa, conversion to the mucoid phenotype marks the onset of an irreversible state of the infection in Cystic Fibrosis (CF) patients. The main pathway for mucoid conversion is mutagenesis of the mucA gene, frequently due to -1 bp deletions in a simple sequence repeat (SSR) of 5 Gs (G(5)-SSR(426)). We have recently observed that this mucA mutation is particularly accentuated ...

2016
Morad M Mokhtar Sami S Adawy Salah El-Din S El-Assal Ebtissam H A Hussein

The present investigation was carried out aiming to use the bioinformatics tools in order to identify and characterize, simple sequence repeats within the third Version of the date palm genome and develop a new SSR primers database. In addition single nucleotide polymorphisms (SNPs) that are located within the SSR flanking regions were recognized. Moreover, the pathways for the sequences assign...

2016
Jin-Hee Kim Jun-Hoi Kim Won-Sam Jo Jeong-Gwan Ham Il Kyung Chung Kyung-Min Kim

In this study, a cDNA library was constructed from the total RNA of sweet potato leaves. A total of 789 copies of the cDNA were cloned in Escherichia coli by employing the pGEM-T Easy vector. Sequencing was carried out by Solgent Co. (Korea). As many as 579 expressed sequence tag-simple sequence repeat (EST-SSR) markers were designed (73.38%) from the known cDNA nucleotide base sequences. The l...

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