نتایج جستجو برای: genotyping assay

تعداد نتایج: 242708  

Journal: :Mutation research 2005
Richard Shen Jian-Bing Fan Derek Campbell Weihua Chang Jing Chen Dennis Doucet Jo Yeakley Marina Bibikova Eliza Wickham Garcia Celeste McBride Frank Steemers Francisco Garcia Bahram G Kermani Kevin Gunderson Arnold Oliphant

We have developed a flexible, accurate and highly multiplexed SNP genotyping assay for high-throughput genetic analysis of large populations on a bead array platform. The novel genotyping system combines high assay conversion rate and data quality with >1500 multiplexing, and Array of Arrays formats. Genotyping assay oligos corresponding to specific SNP sequences are each linked to a unique seq...

2015
Eddie M. Wampande Stavroula K. Hatzios Beatrice Achan Ezekiel Mupere Mary Nsereko Harriet K. Mayanja Kathleen Eisenach W Henry Boom Sebastien Gagneux Moses L. Joloba

BACKGROUND Accurate and high-throughput genotyping of Mycobacterium tuberculosis complex (MTBC) may be important for understanding the epidemiology and pathogenesis of tuberculosis (TB). In this study, we report the development of a LightCycler® real-time PCR single-nucleotide-polymorphism (LRPS) assay for the rapid determination of MTBC lineages/sublineages in minimally processed sputum sample...

Journal: :American journal of translational research 2009
Claudine L Bartels Angela L Marchetti W Edward Highsmith Gregory J Tsongalis

Alpha-1 antitrypsin (A1AT or AAT) is a serine protease inhibitor (PI) which, when present at low levels, can cause chronic obstructive pulmonary disease (COPD) and liver disease in both children and adults. Several mutations within the SERPINA1 gene have been found to cause this deficiency. The most common variants are PI*Z and PI*S, each caused by a single nucleotide polymorphism (SNP). We des...

Journal: :Experimental and molecular pathology 2013
Soya S Sam Heather B Steinmetz Gregory J Tsongalis Laura J Tafe Joel A Lefferts

Hepatitis C viral infection is a major cause of progressive liver disease. HCV genotype is one of the most significant baseline predictors of response to HCV antiviral therapy. The objective was to evaluate an HCV genotyping method that targets the 5'-untranslated region (UTR) to detect genotypes/subtypes using the GenMark eSensor® XT-8 system. The HCV amplicon of major genotypes/subtypes from ...

Journal: :Diagnostic molecular pathology : the American journal of surgical pathology, part B 2007
Laura J Tafe Dorothy R Belloni Gregory J Tsongalis

Classic hereditary hemochromatosis is an autosomal recessive disorder characterized by iron overload and sequence variants in the HFE gene. The HFE gene is located at 6p21.3 and contains 2 common single nucleotide polymorphisms (SNPs) C282Y and H63D, which are routinely tested for in the molecular diagnostics laboratory. In this study, we used DNA samples from 59 patients in which clinicians wa...

Farzaneh Sabahi, Fatemeh Zali, Hooman Kaghazian, Mahdi Paryan, Manoochehr Makvandi, Mostafa Ghaderi, Seyed Dawood Mousavi-Nasab, Siamak Mirab Samiee,

Background: Human rotavirus (HRV) is the causative agent of severe gastroenteritis in children and responsible for two million hospitalizations and more than a half-million deaths annually. Sequence characteristics of the gene segments encoding the VP7 and VP4 proteins are used for the genotype classification of rotavirus. A wide variety of molecular methods are available, mainly based on rever...

Journal: :Sensors and Actuators B-chemical 2022

Forensic Short Tandem Repeat (STR) genotyping is almost exclusively performed by capillary electrophoresis (CE) in specialized laboratories. As an alternative to CE, and enable miniaturized lab-on-a-chip STR profiling, we developed the QueSTR probes, a hybridization-based assay that relies on recognition cleavage of RNA:DNA duplex RNase H2 enzyme. For each allele be genotyped, matching DNA prob...

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